Input parameters:

  Query = CsaV3_1G009480 (Len=430)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G009480, Len=430):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPRTTTLDCPGCPPLRALTFDVLGLVKVIEARGKEGEIPKVVERWGEPDFSKSVLAASLVDRKFDPLLAVARKNGLIEVL 80  
WD40-rpts                                               (_________________WD 1_________________

Query       81 NPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESRRCTLLSCTTKGNASMRSIGFSSSLSKDASTDLVKTWKV 160 
WD40-rpts      )                                          (_______________WD 2_______________) 

Query      161 CGSGDVTCTKVDGSETHALFGGKGVEVNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQV 240 
WD40-rpts       (_________________WD 3________________)   (__________________WD 4______________

Query      241 RLYDISAQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIRSIARHPELPVIASC 320 
WD40-rpts      ___)(___________________WD 5__________________)   (_________________WD 6________

Query      321 GLDSYVRFWDIKTRQLLSAVFLKQHLTGVVFDSHFVEEDVTQTAVESIQQETEAAQTVSEEEHMPRKRKKSSKEGGEGGK 400 
WD40-rpts      _________)(____________________WD 7____________________)                        

Query      401 RKGNKTTDKESKKSRRKSHGETERKQKKMV 430 
WD40-rpts                                    

7 WD40-repeats found in QUERY=CsaV3_1G009480 (Len=430):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    42-81       8.12  449.95  5.4e-05       12.5%     34.79
  WD 2:  Seg  9   124-159      6.57  385.89  0.00039       17.5%     44.28
  WD 3:  Seg 13   162-200      7.01  404.25  0.00022       17.5%     49.87
  WD 4:  Seg 17   204-244      7.31  416.45  0.00015       15.0%     47.43
  WD 5:  Seg 20   245-287      8.36  460.02  3.9e-05       15.0%     57.31
  WD 6:  Seg 24   291-330      8.08  448.25  5.7e-05       27.5%     59.18
  WD 7:  Seg 28   331-376      5.23  330.76  0.00217       17.5%     38.86

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-81     VE---R----WGEPDFSKSVL-A--ASLVD--RKFDPLLAVARKNGLIEVLN
   WD 2  124-159    -C---T----LLSCTTKGNAS-M--RSIGF--SSS---LSKDASTDLVKTWK
   WD 3  162-200    -G---S----GDVTCTKVDGS-E--THALF--GGKGVEVNMWNLEQCTKIWT
   WD 4  204-244    -P---K----KNNLGIFTPTW-F--TSATFLSKDDHRKFAAGTNSHQVRLYD
   WD 5  245-287    ISAQKR----PVISFDFRETP-I--KSLAE--DVDGNTIFVGNASGDLASFD
   WD 6  291-330    -G---K----LLGCFLGKCSGSI--RSIAR--HPELPVIASCGLDSYVRFWD
   WD 7  331-376    IK---TRQLLSAVFLKQHLTG-VVFDSHFV--EEDVTQTAVESIQQETEAAQ

   WD40 Template    TG---E----CLRTLSGHTSG-V--TSVSF--SPDGKRLVSGSEDGTIKVWD