Input parameters:

  Query = BGIBMGA009968-PA (Len=228)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BGIBMGA009968-PA, Len=228):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKRPRLIQHIKDCHEEGQVEVSAVEIIESVDGYFIVTASGKSPSVVLWQSNERCLFQSEIDIAIPNGNAVKSLAVSNTK 80  
WD40-rpts                (__________________WD 1_________________)(____________________WD 2____

Query       81 DMLAVGLDGNSWPILLDVNTATILMTAERTVNVRQVVRDIQWRNENTIIYVTHSGMLNQIDTRIQKIVYDAKDPFLSRLY 160 
WD40-rpts      ________________)   (__________________WD 3_________________)  (________________

Query      161 CVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQRNKASAAHAAEALKKEKYPDFETFFIGAPLALALA 228 
WD40-rpts      __WD 4_________________)                                            

4 WD40-repeats found in QUERY=BGIBMGA009968-PA (Len=228):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-51       4.08  283.03  0.00951       12.5%     30.55
  WD 2:  Seg  5    52-97       4.89  316.72  0.00335       20.0%     40.35
  WD 3:  Seg  8   101-141      5.34  335.28  0.00189       12.5%     41.55
  WD 4:  Seg 12   144-184      7.71  432.95  9.1e-05       17.5%     36.52

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-51     IKDCHEEG-----QVEVSA-VEIIESVD--GY--FIVTASGKSPSVVL-WQS
   WD 2   52-97     NERC---LFQSEIDIAIPN-GNAVKSLA--VSNTKDMLAVGLDGNSWPILLD
   WD 3  101-141    -ATI---L-----MTAERT-VNVRQVVRDIQWRNENTIIYVTHSGMLN-QID
   WD 4  144-184    IQKI---V-----YDAKDPFLSRLYCVK--TDHNNAILVGSSEYSRCV-LFD

   WD40 Template    TGEC---L-----RTLSGH-TSGVTSVS--FSPDGKRLVSGSEDGTIK-VWD