Input parameters:

  Query = BMgn005652 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BMgn005652, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNRTAFGKKSLNRRRPRVDRFVLPREQLAEIKSRALWKIPSAYTGDIWSSEYLQRKKYAEYLDEAFGLEPLKAHDCNQSI 80  
WD40-rpts                                                                                      

Query       81 PDGYRAQAWPCVPRKRRYLTSADSILDLPTYSYALFPELLDWSSDNILVAALGRNYHKWSWRTQSLTNQGFTQYEIQCCK 160 
WD40-rpts                                                                    (_________________

Query      161 FDPRGELLLLGTDNQITEIHNNAMSKWVAECSCLCNRFVAICSITAVDWSPTGNSFITGCSRGVLVSYTRTGDMLGWRRV 240 
WD40-rpts      WD 1________________)           (________________WD 2_______________)(__________

Query      241 GETMLAVRVSPDARYVAAAAVNGTTVLVMTWPLLHLYSSLGSNWTVKALSWHPWRSALLGVGAVTSRMNAHVAVWDAPTS 320 
WD40-rpts      _______WD 3_________________)   (___________________WD 4___________________)(___

Query      321 RVTDTTIRHSRHSLDAMLFSHKTGELVISLWNPERAVSSPKTCSQLVVMSGPDKVVDQWGEERSGLDRIRTMVFSPDGTK 400 
WD40-rpts      ________________WD 5__________________)          (____________________WD 6______

Query      401 LATATADEDLIIWNFLPEDSKRKKWKCDRFWALPLYLDETTYGLSMR 447 
WD40-rpts      _____________)                                 

6 WD40-repeats found in QUERY=BMgn005652 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   143-181      7.24  413.81  0.00016       15.0%     54.52
  WD 2:  Seg 10   193-229      5.85  356.27  0.00098       22.5%     41.98
  WD 3:  Seg 13   230-269      8.83  479.55  2.1e-05       15.0%     56.39
  WD 4:  Seg 17   273-316      6.40  378.94  0.00049       25.0%     45.91
  WD 5:  Seg 21   317-359      5.74  351.76  0.00113       15.0%     49.30
  WD 6:  Seg 26   370-414      8.52  466.49  3.2e-05       22.5%     57.30

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  143-181    -T-----Q---SLTNQGFTQYEIQCCKFDPRGELL-----LLGTDNQITEIHN
   WD 2  193-229    -----------CLCNRFVAICSITAVDWSPTGNSF-----ITGCSRGVLVSYT
   WD 3  230-269    RT-----G---DMLGWRRVGETMLAVRVSPDARYV-----AAAAVNGTTVLVM
   WD 4  273-316    -L-----L---HLYSSLGSNWTVKALSWHPWRSALLGVGAVTSRMNAHVAVWD
   WD 5  317-359    AP-----TSRVTDTTIRHSRHSLDAMLFSHKTGEL-----VISLWNPERAVSS
   WD 6  370-414    SGPDKVVD---QWGEERSGLDRIRTMVFSPDGTKL-----ATATADEDLIIWN

   WD40 Template    TG-----E---CLRTLSGHTSGVTSVSFSPDGKRL-----VSGSEDGTIKVWD