WDRR: WD40 Repeat Recognition
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| JobID: 59LH71659459533 Submitted: 2022-08-03 00:58:53 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79792127 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G001610 (Len=1138) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G001610, Len=1138): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPHLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTAAPVPAPLAGWMSNPSAVTHPAVSSGGAIGLGAPSMPAALKHPRTPPNNPSVDYPSAESEIVSKRPKPMGMSDEVNLP 320
WD40-rpts
Query 321 VNVLPVSFAGHGHAQAFNAPDDLPKNVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGEIGLWEVGSRERLVSRSFKVWDL 400
WD40-rpts (_________________WD 1_________________) (
Query 401 NACSMPLQAALLKEPDVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDLRQHLEIDAHVGGVNDLAFSNPNKQLCVIT 480
WD40-rpts ____________________WD 2___________________) (__________________WD 3_______
Query 481 CGDDKTIKVWDAANGARQFTFEGHEAPVYSVCPHYKESIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSAD 560
WD40-rpts __________) (__________________WD 4_________________) (___________________WD
Query 561 GTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGL 640
WD40-rpts 5__________________) (_________________WD 6_________________) (____________
Query 641 PASPRIRFNKDGTLLAVSGNENGIKILANLDGIRLLRTFENLSYDASRTSEAGTKPAINPISAAAAVAAAAAGSATDRGA 720
WD40-rpts ______WD 7_________________) (_________________WD 8________________)(_____
Query 721 SVVSMAGVAGDTRSLGDVKPRITEDSNDKSKIWKLTEINEPSHCRSLRLPENLRVNKISRLIYTNSGSAILALASNAIHL 800
WD40-rpts ____________WD 9_________________)(______________________WD10___________________
Query 801 LWKWTRSERNSTGKATANVLPQLWQPSSGILMTNDVADTGSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM 880
WD40-rpts __) (___________________WD11___________________) (_______
Query 881 PPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWSSDGWEK 960
WD40-rpts __________WD12_________________) (_________________WD13________________)
Query 961 QKTRSLQLPSGRPLSSQSDTRVQFHQDQIHFLVVHETQIAIYETTKLECVKQWTPRESGAPISHATFSCDSQMIYGSFLD 1040
WD40-rpts (_________________WD14________________)(___________________WD15_____________
Query 1041 GTVCVFTVATLRLRCRISPSAYLPASVSNASVQPLVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSAS 1120
WD40-rpts ______) (___________________WD16__________________)
Query 1121 SVPTTPSVGASGSDQAPR 1138
WD40-rpts
 16 WD40-repeats found in QUERY=CmaCh01G001610 (Len=1138): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 344-383 5.92 359.40 0.00089 22.5% 54.26 WD 2: Seg 10 400-444 7.24 413.62 0.00017 20.0% 49.29 WD 3: Seg 13 451-491 7.30 416.31 0.00015 35.0% 52.68 WD 4: Seg 17 495-535 7.36 418.73 0.00014 32.5% 57.06 WD 5: Seg 21 539-581 6.26 373.39 0.00058 22.5% 56.29 WD 6: Seg 25 585-624 7.57 427.16 0.00011 30.0% 57.63 WD 7: Seg 29 628-668 6.46 381.51 0.00045 20.0% 58.04 WD 8: Seg 33 676-714 5.67 348.82 0.00124 10.0% 32.79 WD 9: Seg 37 715-754 5.08 324.62 0.00262 10.0% 33.38 WD10: Seg 41 755-803 6.09 366.19 0.00072 7.5% 45.68 WD11: Seg 46 826-869 5.23 330.80 0.00217 17.5% 43.95 WD12: Seg 50 873-912 7.12 408.83 0.00019 22.5% 59.59 WD13: Seg 54 916-954 8.96 484.74 1.8e-05 32.5% 58.60 WD14: Seg 59 965-1003 5.12 326.21 0.00250 12.5% 29.79 WD15: Seg 62 1004-1047 6.77 394.42 0.00030 22.5% 55.18 WD16: Seg 67 1058-1100 5.12 326.29 0.00249 15.0% 33.34Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 344-383 -PK---------N-----V-----MRTLNQGS--SPMSM---DFHP-VQQTLL--LVGT----NVGEIGLWE WD 2 400-444 LNA---------CSMPLQA-----ALLKEPDV--SVNRV---IWSP-DGSL-F--GVAY----SRHIVQIYS WD 3 451-491 -LR---------Q-----H-----LEIDAHVG--GVNDL---AFSN-PNKQ-LCVITCG----DDKTIKVWD WD 4 495-535 -GA---------R-----Q-----FTFEGHEA--PVYSV-CPHYKE-SIQF-I--FSTA----LDGKIKAWL WD 5 539-581 -MG---------S-----R-----VDYDAPGR--WCTTM---AYSA-DGTR-L--FSCGTSKDGESYIVEWN WD 6 585-624 -GA---------V-----K-----RTYQGFRK-RSLGVV---QFDT-TKNR-F--LAAG----DDFSIKFWD WD 7 628-668 -VQ---------L-----L-----TTVDADGGLPASPRI---RFNK-DGTL-L--AVSG----NENGIKILA WD 8 676-714 -LR---------T-----F-----ENLSYDAS--RTSEA---GTKP-AINP-I--SAAA----AVAAAAAGS WD 9 715-754 ATD---------R-----G-----ASVVSMAG--VAGDT---RSLG-DVKP-R--ITED----SNDKSKIWK WD10 755-803 LTEINEPSHCRSL-----R-----LPENLRVN--KISRL---IYTN-SGSA-I--LALA----SNAIHLLWK WD11 826-869 PSS---------G-----ILMTNDVADTGSEE--AVPCF---ALSK-NDSY-V--MSAS-----GGKISLFN WD12 873-912 -FK---------T-----M-----TTFMPPPP--AATFL---AFHPQDNNI-I--AIGM----DDSTIQIYN WD13 916-954 -DE---------V-----K-----SKLKGHSK--RITGL---AFSH-LLNV-L--VSSG----ADAQLCVWS WD14 965-1003 SLQ---------L-----P-----SGRPLSSQ--SDTRV---QFHQ-DQIH-F--LVVH-----ETQIAIYE WD15 1004-1047 TTK---------L-ECVKQ-----WTPRESGA--PISHA---TFSC-DSQM-I--YGSF----LDGTVCVFT WD16 1058-1100 SPS---------A-----Y-----LPASVSNA--SVQPLVIAAHPQ-EANQ-F--ALGL----SDGGVHVFE WD40 Template TGE---------C-----L-----RTLSGHTS--GVTSV---SFSP-DGKR-L--VSGS----EDGTIKVWD |
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