Input parameters:

  Query = CmaCh11G013810 (Len=438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G013810, Len=438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGEQNGGVDEVMEEFAIWKKNSPYLYDLLISHSLEWPSLTVDWVPLAPFPHPANSSLAVHKLVLGTHTSEDVPNFLMVA 80  
WD40-rpts                                                                          (___________

Query       81 DVILPVKASETRIDITGENPIMPEVEITQKIRVDGEVNRARCMPQNPEIVGAKTSGCEVYVFNCAKQGAKAQGGECDPDL 160 
WD40-rpts      ____WD 1_______________)                                                   (____

Query      161 RLRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMNVYEAHESVVGDVSWHLKNENLFGSVGDDCLL 240 
WD40-rpts      _____________WD 2_________________)(______________________WD 3__________________

Query      241 VIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWILATASSDTTVGLFDLRKLAEPLHVLSSHTEGVYEVEWDPNHETVLAS 320 
WD40-rpts      ___)   (_________________WD 4_________________)    (_________________WD 5_______

Query      321 SGDDRRLMVWDLNNMGNEQDGDAEDGPPELLFSHGGHKAKISDFSWNAHQPWVIASVAEDNSVQVWQMAKGTGVFHRKKL 400 
WD40-rpts      __________)                (_________________WD 6_________________)       (_____

Query      401 RHFKYLPQMGREMIIKCCSCATIHLLIEVCTTPQALTG 438 
WD40-rpts      _________WD 7_____________)           

7 WD40-repeats found in QUERY=CmaCh11G013810 (Len=438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    69-104      3.63  264.76  0.01672       10.0%      1.93
  WD 2:  Seg  8   156-195      6.90  399.50  0.00026       35.0%     53.10
  WD 3:  Seg 12   196-244      6.60  387.30  0.00038       25.0%     47.01
  WD 4:  Seg 15   248-287      7.66  431.28  9.6e-05       27.5%     56.48
  WD 5:  Seg 19   292-331      8.26  455.87  4.5e-05       40.0%     51.88
  WD 6:  Seg 23   348-387      6.31  375.12  0.00055       25.0%     55.99
  WD 7:  Seg 27   395-427      4.86  315.35  0.00350       10.0%     43.48

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   69-104    TS--------E----DVPNFLMVADVILPV-KA--S-E-T-RIDITGENPIMPE
   WD 2  156-195    -C--------DPDLRLRGHDKEGYGLSWSPFKE--G-Y-L-LSGSNDQKICLWD
   WD 3  196-244    VSSMADKNVLDAMNVYEAHESVVGDVSWHL-KN--E-N-LFGSVGDDCLLVIWD
   WD 4  248-287    -N--------KSVDSVRAHEEEVNYVSFNP-YN--EWI-L-ATASSDTTVGLFD
   WD 5  292-331    -A--------EPLHVLSSHTEGVYEVEWDP-NH--E-TVL-ASSGDDRRLMVWD
   WD 6  348-387    -P--------ELLFSHGGHKAKISDFSWNA-HQ--PWV-I-ASVAEDNSVQVWQ
   WD 7  395-427    -----------------FHRKKLRHFKYLP-QMGRE-M-I-IKCCSCATIHLLI

   WD40 Template    TG--------ECLRTLSGHTSGVTSVSFSP-DG--K-R-L-VSGSEDGTIKVWD