WDRR: WD40 Repeat Recognition
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| JobID: 4V3XV1659460980 Submitted: 2022-08-03 01:23:00 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79754439 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G012780 (Len=782) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G012780, Len=782): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTTKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAILSLTGHTSGIDSVSFDSSEVLVAAGAAS 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2__________
Query 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSSDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160
WD40-rpts ______) (_________________WD 3________________) (_________________WD 4______
Query 161 GGEDNTVKLWDLTAGKLLHDFKSHEGPIQCIDFHPHEFLLATGSADKAVKFWDLETFELIGSAGPETTGVRCLTFNPDGR 240
WD40-rpts __________) (_________________WD 5________________) (________________WD 6___
Query 241 TLLCGLHENLKVFSWEPIRCHDSVEVGWSRLSDLTVHEGKLLGCSYNQSCVGVWVVDITRTEPYAINNVNRLNGRSEPKS 320
WD40-rpts _____________) (________________WD 7________________) (______________
Query 321 SSNLPLQNESNAKAGFGGLSVSQTSEPQLKETKTSGRLSVSQSSDVVKDPKSLSSTGNGPNTPQRINLNAGPKTNSVSSV 400
WD40-rpts ___WD 8_________________)(__________________WD 9__________________) (_________
Query 401 TVPSAVVPKRNSVKVTSAFNNPIFNKSDVIPVIVPRTSSRHEHDDSRKDFDVAGRTTPLPRTNSRNEQDDSRKEFDVAGR 480
WD40-rpts ________WD10________________) (_________________WD11________________)
Query 481 TVRVPLLSKTTDNRRLFPNVRDEVDNTTISVLSESRGLKANDMGTIADNRNSLHDESRGRKLSRDTSFPEVTKGGRIRSH 560
WD40-rpts
Query 561 VDWEKRERSNFSRLTYNASAGRAAALENLPLNYGRDYHRSPEKETVAPASDEHTIENVLQQHDQFVNSMQSRSAKLQAVY 640
WD40-rpts
Query 641 RYWERHDIKGAVSAMEKMADHAVAADVISILTNRIEVVTLDICSCILPLLSGLLESDLDRFLDISMEMLVKLVRTFGSVI 720
WD40-rpts
Query 721 YSTLSATSSVGVNIEAEQRLERCNLCFIELEKVKRCLPALIRKRGSVAKSAQELNLALQEFQ 782
WD40-rpts
 11 WD40-repeats found in QUERY=CmaCh04G012780 (Len=782): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-45 7.52 425.49 0.00011 25.0% 56.55 WD 2: Seg 5 49-87 9.97 526.54 5.0e-06 42.5% 55.11 WD 3: Seg 9 91-129 10.45 546.48 2.7e-06 45.0% 56.70 WD 4: Seg 13 133-171 11.10 573.09 1.2e-06 50.0% 55.45 WD 5: Seg 17 175-213 9.45 505.16 9.7e-06 30.0% 55.66 WD 6: Seg 21 217-254 7.35 418.38 0.00014 30.0% 57.80 WD 7: Seg 25 258-295 5.62 346.96 0.00131 17.5% 54.69 WD 8: Seg 29 306-345 4.84 314.51 0.00359 10.0% 36.50 WD 9: Seg 32 346-387 5.34 335.36 0.00188 27.5% 54.05 WD10: Seg 36 391-429 4.81 313.27 0.00373 15.0% 25.86 WD11: Seg 39 432-470 3.04 240.08 0.03561 17.5% -18.51Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-45 RAYKLQE-FVAHSSTVNCLKIGRKSSRVLVT-GGEDF-KVNLWA WD 2 49-87 -PNAILS-LTGHTSGIDSVSFD-SSEVLVAA-GAASG-TIKLWD WD 3 91-129 -AKIVRT-LTGHRSNCISVDFH-PFGEFFAS-GSSDT-NLKIWD WD 4 133-171 -KGCIHT-YKGHTRGVNAIRFT-PDGRWVVS-GGEDN-TVKLWD WD 5 175-213 -GKLLHD-FKSHEGPIQCIDFH-PHEFLLAT-GSADK-AVKFWD WD 6 217-254 -FELIGS-AGPETTGVRCLTFN-PDGRTLLC-GLHE--NLKVFS WD 7 258-295 -IRCHDS-VEVGWSRLSDLTVH--EGKLLGC-SYNQS-CVGVWV WD 8 306-345 -INNVNR-LNGRSEPKSSSNLP-LQNESNAK-AGFGGLSVSQTS WD 9 346-387 EPQLKETKTSGRLSVSQSSDVV-KDPKSLSSTGNGPN-TPQRIN WD10 391-429 -GPKTNS-VSSVTVPSAVVPKR-NSVKVTSA-FNNPI-FNKSDV WD11 432-470 -VIVPRT-SSRHEHDDSRKDFD-VAGRTTPL-PRTNS-RNEQDD WD40 Template TGECLRT-LSGHTSGVTSVSFS-PDGKRLVS-GSEDG-TIKVWD |
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