Input parameters:

  Query = sp_Q58DC2_DCAF4_BOVIN (Len=494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q58DC2_DCAF4_BOVIN, Len=494):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHQSSWKSRRHRRRGHRHSAWFRQHGSNERKDAGAQQSPQGSSDGHGEAPSTSSTAGSSSVPDLPGYYFDPEKKRYFRLL 80  
WD40-rpts                                                                                      

Query       81 PGHNNCNPLTKESIRQKEMERKRLRLLEEEEQQGKKIARLGFNASSLLQKSKLGFLNATSYCRLAHELQVSCMQRKKVQI 160 
WD40-rpts                                                                            (_________

Query      161 QSSDPSALASDQFNLIMADTNSDRLFTVNDVKVGGSKYGIISLHGLKTPTFRVHMHENLYFTNRKVNAMCWASLNHLDSH 240 
WD40-rpts      ________WD 1_________________)   (_________________WD 2________________)        

Query      241 VLLCLMGIAETPGCATLLPTSLFVSNHAAGDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLVTSVVTGHRQSF 320 
WD40-rpts                                     (_________________WD 3_________________)(________

Query      321 GTSSDVLTQQFAVTAPLLFNGCRSGEIFAIDLRCQNQGKGWKATCLFHDSAVTSVQILQEEQCLMASDMAGTIKLWDLRT 400 
WD40-rpts      _________WD 4_________________)       (_________________WD 5________________)   

Query      401 TKCIRQYEGHVNEYAHLPLHVHEEEGIMVAVGQDCYTRIWSLHDGQLLRTIPSPYPTSKADIPSVAFSSRLGGARGAPGL 480 
WD40-rpts      (__________________WD 6_________________)   (______________________WD 7_________

Query      481 LMAVRQDLYCFSYS 494 
WD40-rpts      _____________)

7 WD40-repeats found in QUERY=sp_Q58DC2_DCAF4_BOVIN (Len=494):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   151-190      5.71  350.63  0.00117       10.0%      6.35
  WD 2:  Seg  4   194-232      3.37  254.03  0.02324       10.0%     10.00
  WD 3:  Seg 10   272-311      7.52  425.15  0.00012       10.0%     53.50
  WD 4:  Seg 14   312-351      9.21  495.22  1.3e-05       25.0%     51.81
  WD 5:  Seg 18   359-397      8.88  481.31  2.0e-05       35.0%     46.56
  WD 6:  Seg 21   401-441      7.70  432.84  9.1e-05       17.5%     55.36
  WD 7:  Seg 25   445-494      5.23  330.53  0.00218       25.0%     44.93

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  151-190    SCMQRKKVQIQ----SSDPSALAS--DQFNL-------IMADTNSDRLFTVND
   WD 2  194-232    -GGSKYGIISL----HGLKTPTFR--VHMHE-------NLYFTNRKVNAMCWA
   WD 3  272-311    RPGMLCSFRIP----GAWSCAWSL--NIQAN-------NCFSTGLSRRVLVTS
   WD 4  312-351    VVTGHRQSFGT----SSDVLTQQF--AVTAP-------LLFNGCRSGEIFAID
   WD 5  359-397    -KGWKATCLFH----DSAVTSVQI--LQEEQ-------CLMASDMAGTIKLWD
   WD 6  401-441    -TKCIRQYEGH----VNEYAHLPLHVHEEEG-------IMVAVGQDCYTRIWS
   WD 7  445-494    -GQLLRTIPSPYPTSKADIPSVAF--SSRLGGARGAPGLLMAVRQDLYCFSYS

   WD40 Template    TGECLRTLSGH----TSGVTSVSF--SPDGK-------RLVSGSEDGTIKVWD