WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: 4KRC51659459574 Submitted: 2022-08-03 00:59:34 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79791798 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G002430 (Len=1152) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G002430, Len=1152): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MACIKGVNRSASVAIAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDKDFPVIGDSPSSERFNRLSWGKNGSGSE 80
WD40-rpts (_______________WD 1______________) (________________________WD 2____
Query 81 QFSLGLIAGGLVDGNIDIWNPLALIRPEAGETPLVGHLSRHKGPVRGLEFNTITPNLLASGADDGEICIWDLANPSQPIH 160
WD40-rpts ___________________) (_______________WD 3_______________)
Query 161 FPPLKGSGSAAQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSDSTRRRCSVLQWNPDLATQLVVASDDDD 240
WD40-rpts (_________________WD 4_________________) (
Query 241 SPSLRLWDMRNIMTPVKEFVGHTRGVIAMSWCPTDTSYLLTCAKDNRTICWDTISGDIVCELPASTNWNFDVHWYPRIPG 320
WD40-rpts ________________________WD 5_______________________) (_________________WD 6___
Query 321 VISASSFDGKIGMYNIESCSRYGVGENDFNAVSLRAPKWYKRPVGASFGFGGKLVSFQPKTPIAGASAGASEVYVHDLVM 400
WD40-rpts ______________)
Query 401 EHSLVTRSSEFEAAIQNGERSSLRVLCDQKSRISDLEDDRETWGFLKVMFEDDGTARTKLLSHLGFSVSTESQDSQGEIS 480
WD40-rpts
Query 481 QIVDALQLNDTAAADNIGYGDGREATLFPSDNGEDFFNNLPSPKADTPLSVAGDNHAAEDTVAAEEPQVEEGVEDNGVSS 560
WD40-rpts
Query 561 FADGVQRALVVGDYKGAVGLCVSANKMADALVIAHVGGGSLWENTRDQYLKMSHSPYLKIVSAMVNNDLLSLVNTRPLKF 640
WD40-rpts
Query 641 WKETLALLCSFAQKDEWTMLCDTLASKLMVAGYTLPATLCFICAGNIDKTVEIWSRSLSTDHEGKSYVDLLQDLMEKTIV 720
WD40-rpts
Query 721 LALATGQKRFSVTLCKLVEKYAEILASQGQLTTALEYIKLLGSEELTPELVILRERISLSTESDKNDKASTIEYSQQPSE 800
WD40-rpts
Query 801 NMYGAEATKHYYQESASAQFHQSIPSTTYNDNYSQTAYTGRGYTAPTPYQPAAQPNLFLPSQAPQAPETNFTAPPAQPAS 880
WD40-rpts
Query 881 RPFVPATPHALRNVEKYQQPTLGSQLYPGTANPTYQPIQSTASVGSVPSHMDPVPGHTMPQVVAPAPPSRGFMPVPNPGT 960
WD40-rpts
Query 961 VQLPVMGLPQPPSPPTQSTPTQPALTAPAPPPTVQTADTSNVPAHQKAVVATLTRLFNETSEALGGARANPGKKREIEDN 1040
WD40-rpts
Query 1041 SRKIGALFSKLNSGDISKNAAEKVGQLCQALDAGDYGRALQIQVLLTTSEWDECSFWLATLKRMIKTRQNMRLTLPFLCH 1120
WD40-rpts
Query 1121 QSLHTHTHTHTFTRMASLDDCSFRILPQCSPL 1152
WD40-rpts
 6 WD40-repeats found in QUERY=CmaCh01G002430 (Len=1152): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-35 3.07 241.31 0.03430 15.0% 44.64 WD 2: Seg 6 48-100 2.95 236.59 0.03961 20.0% 38.46 WD 3: Seg 9 116-151 6.00 362.46 0.00081 32.5% 48.77 WD 4: Seg 12 162-201 4.42 297.41 0.00610 25.0% 40.31 WD 5: Seg 18 240-292 6.35 376.85 0.00052 35.0% 54.15 WD 6: Seg 22 296-335 5.31 334.09 0.00196 22.5% 54.73Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-35 MACIKG------------V----------NRSASVAIAP-DAP--------Y-MAAGTMAGAVDLSF WD 2 48-100 FQSDDK------------DFPVIGDSPSSERFNRLSWGK-NGSGSEQFSLGL-IAGGLVDGNIDIWN WD 3 116-151 -----G------------HL-----SRHKGPVRGLEFNTITPN--------L-LASGADDGEICIWD WD 4 162-201 -PPLKG------------SG-----SAAQGEISFLSWNS-KVQ--------HILASTSYNGTTVVWD WD 5 240-292 DSPSLRLWDMRNIMTPVKEF-----VGHTRGVIAMSWCPTDTS--------Y-LLTCAKDNRTICWD WD 6 296-335 -GDIVC------------EL-----PASTNWNFDVHWYP-RIP-------GV-ISASSFDGKIGMYN WD40 Template TGECLR------------TL-----SGHTSGVTSVSFSP-DGK--------R-LVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |