WDRR: WD40 Repeat Recognition
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| JobID: 4KCN11659499898 Submitted: 2022-08-03 12:11:38 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79751984 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G017800 (Len=465) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G017800, Len=465): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRGAQGGGAMVMERPSRLNRRRFGAYLQSDPAIFTGSDYEFSSRHSSAVSPMYNYHKSPASSDASPSLMSPWNQSGSPYS 80
WD40-rpts (_________________WD 1_________________)
Query 81 KSPWIVTSRMNLYDDEFYARNGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEYTGFKSSSGLVKSIIFCAD 160
WD40-rpts (________________WD 2_______________)(________________WD 3__
Query 161 RIFTGHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPRNYVKVRRHHNVLRIRHFDAISSMSLNEELGLLYSGS 240
WD40-rpts ______________)(______________WD 4______________)(_________________WD 5_________
Query 241 WDKTMKVWRISNSKCLESISAHDDAVNAVASGLESLVFTGSADGTVKVWRREMQGKGTKHFLVHVLLKQENAVTALAVNR 320
WD40-rpts ________) (________________WD 6________________) (_________________WD
Query 321 HSAVLYSGSSDGVVNYWESEKQLSHGGILRGHKLAVLCLATAGNMMFSGSADKNICVWRREENSGSHTCLSILTGHAGPV 400
WD40-rpts 7________________)(__________________WD 8_________________) (_____________
Query 401 KCLAVKEDKEESPSLPEETAVRKLYNSSRRWIVYSGSLDRSVKVWRVAENAPELFKLREAERPYK 465
WD40-rpts ____WD 9________________)
 9 WD40-repeats found in QUERY=CmaCh11G017800 (Len=465): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 15-54 6.11 367.04 0.00070 10.0% -2.09 WD 2: Seg 4 101-137 6.54 384.66 0.00041 25.0% 51.56 WD 3: Seg 8 138-175 8.84 479.91 2.1e-05 22.5% 51.10 WD 4: Seg 12 176-209 5.13 326.55 0.00247 15.0% 36.29 WD 5: Seg 15 210-249 9.70 515.32 7.0e-06 30.0% 55.73 WD 6: Seg 19 253-290 8.59 469.39 2.9e-05 35.0% 56.51 WD 7: Seg 23 300-338 8.55 467.91 3.1e-05 25.0% 54.06 WD 8: Seg 27 339-379 6.76 394.05 0.00030 32.5% 47.00 WD 9: Seg 31 387-425 7.86 439.39 7.4e-05 22.5% 35.61Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 15-54 PSRLN---RRRFGAYLQSDPAIFTGSDYEFSSRHSSAVSPMYN WD 2 101-137 -NGLI---GSLVREEGHVYSLAVAGD--LLYTGSDSKNIRVWK WD 3 138-175 NLKEY---TGFKSSSGLVKSIIFCADR--IFTGHQDGKIRIWK WD 4 176-209 ---------VSSKNPKSHSRIGSLPTLKEFVKSSMNPRNYVKV WD 5 210-249 RRHHN---VLRIRHFDAISSMSLNEELGLLYSGSWDKTMKVWR WD 6 253-290 -SKCL---ESISAHDDAVNAVASGLES-LVFTGSADGTVKVWR WD 7 300-338 -HFLV---HVLLKQENAVTALAVNRHSAVLYSGSSDGVVNYWE WD 8 339-379 SEKQLSHGGILRGHKLAV--LCLATAGNMMFSGSADKNICVWR WD 9 387-425 -HTCL---SILTGHAGPVKCLAVKEDKEESPSLPEETAVRKLY WD40 Template TGECL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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