Input parameters:

  Query = CmaCh14G003090 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G003090, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELWDGGFELKETAKLEGHTDRVWSLAWNPATGVGGIPLVFASCSGDKTVRIWEKNPSSGSWNCKAVLEETHTRTVRSCA 80  
WD40-rpts           (______________________WD 1_____________________)(_____________________WD 2

Query       81 WSPNGKLLATASFDATTAIWENIGGDYECVSTLEGHENEIKSVSWNASGSLLATCSRDRTVWIWEVFPGNEYECVSVLQG 160 
WD40-rpts      ____________________)     (_________________WD 3________________)      (________

Query      161 HTQDVKMVQWHPTMDLLFSCSYDNTVKVWAGDDDNDDWHCVQTLDESNNGHSSTVWTLSFNPTGNKMVTCSDDLTLKIWE 240 
WD40-rpts      _________WD 4________________)             (________________WD 5_______________)

Query      241 SNETRLHSGGGYSPWRHTCTLSGYHDRTIFSVHWSRNGIIASGAADDSIRLFVENQEKVIDGPSFQLLFKKEKAHNMDVN 320 
WD40-rpts                           (_____________WD 6_____________)(_______________________WD 

Query      321 SVQWSPGEERLLGSSSDDGTIRIWELIPNS 350 
WD40-rpts      7_______________________)     

7 WD40-repeats found in QUERY=CmaCh14G003090 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     6-54       7.78  436.00  8.3e-05       32.5%     58.20
  WD 2:  Seg  6    55-101      8.55  467.75  3.1e-05       32.5%     48.86
  WD 3:  Seg 10   107-145     10.00  527.60  4.8e-06       37.5%     51.95
  WD 4:  Seg 14   152-190      9.67  514.06  7.3e-06       42.5%     52.27
  WD 5:  Seg 19   204-240      9.60  511.15  8.0e-06       35.0%     45.48
  WD 6:  Seg 23   262-293      6.28  373.89  0.00057       25.0%     47.37
  WD 7:  Seg 26   294-345      7.89  440.45  7.2e-05       35.0%     52.28

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-54     GGFELK-----------E-------TAKLEGHTDRVWSLAWNP-ATGVGGIPLVFASCSGDKTVRIWE
   WD 2   55-101    KN---P-----------SSGSWNCKAVLEETHTRTVRSCAWSP-NGK------LLATASFDATTAIWE
   WD 3  107-145    -Y---E-----------C-------VSTLEGHENEIKSVSWNA-SGS------LLATCSRDRTVWIWE
   WD 4  152-190    -Y---E-----------C-------VSVLQGHTQDVKMVQWHP-TMD------LLFSCSYDNTVKVWA
   WD 5  204-240    -----------------L-------DESNNGHSSTVWTLSFNP-TGN------KMVTCSDDLTLKIWE
   WD 6  262-293    SG----------------------------YHDRTIFSVHWSR-NG-------IIASGAADDSIRLFV
   WD 7  294-345    EN---QEKVIDGPSFQLL-------FKKEKAHNMDVNSVQWSPGEER------LLGSSSDDGTIRIWE

   WD40 Template    TG---E-----------C-------LRTLSGHTSGVTSVSFSP-DGK------RLVSGSEDGTIKVWD