Input parameters:

  Query = CmaCh01G012080 (Len=844)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G012080, Len=844):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCVYLFIWSFKWITMEASFDHLRNQDDLSGVCEEDILADPYVPSLKWSDISLRQWLDKPERSVDALECLHIFSQIVEIVN 80  
WD40-rpts                                                                                      

Query       81 IAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQTVEVIKASSPFPSSLGSEGFRSIMTPINALSE 160 
WD40-rpts                                                                                      

Query      161 TSCMQSSSVYAALISLNEGSGECRKKDGRHVEEAEDKMQSFPMKQILAMETTWYSSPEEASGGPSSSASDIYRLGVLLFE 240 
WD40-rpts                                                                                      

Query      241 LFCSFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKLSDILQSEFLNEPRDDLEEREAAIELRKR 320 
WD40-rpts                                                                                      

Query      321 IEEQELLLEFLLLMQQRKQEASHKLQDTISFLRSDIEQVMMHQTNFKRKSRSCPDLEKDNHLPLNLSSTTRVENTDSAGL 400 
WD40-rpts                                                                                      

Query      401 GSRKRCRPGILIPDLEVCGDNLDDNQNEQGVLFKYSRLMKNFKKLELAYFLMRGRVNKPSRRQFIKHSSISSEGRGSTVV 480 
WD40-rpts                                                                                      

Query      481 NERSSVNNLASKKSCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIK 560 
WD40-rpts                                          (_____________________WD 1__________________

Query      561 VFGYESIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMEEHERRVWSIDFSSEDP 640 
WD40-rpts      __)          (_________________WD 2_________________)   (_________________WD 3__

Query      641 TILASGSDDGSVKLWSINQGMSIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHSKTVSYVK 720 
WD40-rpts      _______________)   (_________________WD 4________________)(__________________WD 

Query      721 YIDSSTLVSASTDNTLKLWDLSMCSSRVIDSPVHSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKF 800 
WD40-rpts      5__________________)         (_________________WD 6________________)          (_

Query      801 EIDPLSGHEMDAAAQFISSVCWRGQSSSLVAANSTGHIKILEMV 844 
WD40-rpts      __________________WD 7___________________)  

7 WD40-repeats found in QUERY=CmaCh01G012080 (Len=844):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   517-563      7.82  437.73  7.8e-05       25.0%     53.58
  WD 2:  Seg 14   574-613      6.62  387.98  0.00037       22.5%     50.00
  WD 3:  Seg 18   617-656      8.71  474.27  2.5e-05       35.0%     56.18
  WD 4:  Seg 22   660-698      6.63  388.45  0.00036       32.5%     56.67
  WD 5:  Seg 26   699-740      8.07  447.96  5.7e-05       40.0%     51.28
  WD 6:  Seg 30   750-788      7.97  444.05  6.4e-05       17.5%     54.30
  WD 7:  Seg 33   799-842      6.16  369.28  0.00066       27.5%     48.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  517-563    FSK---LKVKADLKQGDLLNS-----SNLVCSLSFDR-D-GE-FFATAGVNRKIKVFG
   WD 2  574-613    -IH---YP-------VVEMAS-----RSKLSSVCWNR-Y-IKSQIASSNFEGVVQVWD
   WD 3  617-656    -SQ---VV-------TEMEEH-----ERRVWSIDFSSED-PT-ILASGSDDGSVKLWS
   WD 4  660-698    -GM---SI-------GTIRTK-----AN-VCCVQFPV-DSGR-SLAFGSADHKIYYYD
   WD 5  699-740    MRNIRVPL-------CTFTGH-----SKTVSYVKY-I-D-SS-TLVSASTDNTLKLWD
   WD 6  750-788    -DS---PV-------HSFTGH-----MNVKNFVGLSV-S-DG-YIATGSETNEVFIYH
   WD 7  799-842    -KF---EI-------DPLSGHEMDAAAQFISSVCWRG-Q-SS-SLVAANSTGHIKILE

   WD40 Template    TGE---CL-------RTLSGH-----TSGVTSVSFSP-D-GK-RLVSGSEDGTIKVWD