Input parameters:

  Query = CsaV3_5G024560 (Len=492)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G024560, Len=492):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNQSIRYTHHSIPFFPNFNLIILQIKPIPILQFLPTDSKIPFFFFTPPLPPSLLPLSLSLSSMDPPVTEAATPLLHSTS 80  
WD40-rpts                                        (_________________WD 1_________________)      

Query       81 SESSSDADDHTPPTSYRFHFKGIKFPCDFLNKSPSGYSSYRPLAVLPGHIGSVSSLALCGEFILSASQGKDIIVWQQPDL 160 
WD40-rpts                                            (________________WD 2________________)   (

Query      161 RVFTRFGHGEGSVKAVVAVGNRVFTAHQDGKIRVWKVSRRSENNFRLVNTLPTAKDYLGKFMKQSNYVQTRRHHKILWIE 240 
WD40-rpts      ________________WD 3_______________)                           (________________

Query      241 HADTISCLAVHNGLIYSGSWDKTLKVWRVSDLKCLESIKAHDDAINGVVACNGIVYSASADGKIKAWGRRKKEEEQVEEE 320 
WD40-rpts      ____WD 4___________________)   (________________WD 5_______________)            

Query      321 MHSLLGILEGHKDVSINSVVVSNDGKWVFGGISDGFLMGWEKIGETMSWKVVCEKKAHKMAVLCVCLTGEFLCSGSADKS 400 
WD40-rpts       (_________________WD 6_________________)       (________________WD 7___________

Query      401 IGIWRREAFGRLCKIGVINGHEGPIKCLQAAPNGVGEGFLLYSGSLDKSLRVWWVSKASASSSSSSSSSSSSSAMGVGAF 480 
WD40-rpts      ____)(______________________WD 8_____________________)(________________WD 9_____

Query      481 VAEDSKKSIISF 492 
WD40-rpts      ___________)

9 WD40-repeats found in QUERY=CsaV3_5G024560 (Len=492):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    35-74       3.24  248.30  0.02770       12.5%     -21.98
  WD 2:  Seg  6   119-156      8.79  477.55  2.3e-05       30.0%     54.23
  WD 3:  Seg 10   160-196      6.83  396.77  0.00028       22.5%     49.04
  WD 4:  Seg 16   224-268      6.54  384.99  0.00040       25.0%     46.93
  WD 5:  Seg 20   272-308      7.32  416.84  0.00015       27.5%     53.63
  WD 6:  Seg 25   322-361      8.28  456.55  4.4e-05       35.0%     51.87
  WD 7:  Seg 29   369-405      6.68  390.59  0.00034       25.0%     50.98
  WD 8:  Seg 33   406-454      7.48  423.54  0.00012       27.5%     52.21
  WD 9:  Seg 37   455-492      4.23  289.21  0.00786       17.5%     32.43

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-74     LPT-----DSKI-------PFFFFT-PPLPPSLLPLSL----SLSSMDPPVTEAATP
   WD 2  119-156    SYR-----PLAV-------LPGHIG-SVSSLALC--GE----FILSASQGKDIIVWQ
   WD 3  160-196    -LR-----VFTR-------FGHGEG-SVKAV--VAVGN----RVFTAHQDGKIRVWK
   WD 4  224-268    QSN-----YVQTRRHHKILWIEHAD-TISC--LAVHNG----LIYSGSWDKTLKVWR
   WD 5  272-308    -LK-----CLES-------IKAHDD-AINGVVAC--NG----IVYSASADGKIKAWG
   WD 6  322-361    -HS-----LLGI-------LEGHKDVSINSVVVSNDGK----WVFGGISDGFLMGWE
   WD 7  369-405    -WK-----VVCE-------KKAHKM-AV--LCVCLTGE----FLCSGSADKSIGIWR
   WD 8  406-454    REAFGRLCKIGV-------INGHEG-PIKCLQAAPNGVGEGFLLYSGSLDKSLRVWW
   WD 9  455-492    VSK-----ASAS-------SSSSSS-SSSSSSAMGVGA----FVAEDSKKSIISF--

   WD40 Template    TGE-----CLRT-------LSGHTS-GVTSVSFSPDGK----RLVSGSEDGTIKVWD