Input parameters:

  Query = sp_Q6PCD5_RFWD3_HUMAN (Len=774)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q6PCD5_RFWD3_HUMAN, Len=774):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQPAPQLSVDL 80  
WD40-rpts                                                                                      

Query       81 TEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSMTNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRR 160 
WD40-rpts                                                                                      

Query      161 ARAGGSQRTDSARLRAPLDAYFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE 240 
WD40-rpts                                                                                      

Query      241 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWL 320 
WD40-rpts                                                                                      

Query      321 KGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDL 400 
WD40-rpts                                                                                      

Query      401 QKLTSHQSQNLQQPRGSQAWVLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK 480 
WD40-rpts                                                                                      

Query      481 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGRPVWSCCWCLDEANYIYAGLA 560 
WD40-rpts         (___________________WD 1__________________)                                  

Query      561 NGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASAAFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCID 640 
WD40-rpts                                                                                      

Query      641 FQTENSSRHCLVTYRPDKNHTTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD 720 
WD40-rpts                                                                                      

Query      721 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE 774 
WD40-rpts                                                            

1 WD40-repeats found in QUERY=sp_Q6PCD5_RFWD3_HUMAN (Len=774):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   484-526      2.82  231.05  0.04687       27.5%     36.98

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  484-526    TANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTS

   WD40 Template    TG--ECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD