Input parameters:

  Query = CsaV3_6G016240 (Len=562)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G016240, Len=562):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPTTRSLSFPRVIVEKDTDSEHSSSEEEEEEDDEEPLDDEDEDENGKSFENEGQRIEEESSKKGKAPITLSLKKVCKVC 80  
WD40-rpts                                                                                      

Query       81 KRTGHEAGFKGATYIDCPMKPCFLCKMPGHTTMTCPHRVATEFGVIPASHKNTRNALLYVFERQFKPHIPPIKPAYVIPD 160 
WD40-rpts                            (________________WD 1_______________)                     

Query      161 QVNCAVIRYHSRRVTCLEFHPTNNRLLLSGDKKGQVGVWDYDKVHEKVVYGNIHSCIVNNMRFSPTNDGMIYAASSDGTI 240 
WD40-rpts      (_________________WD 2_________________)(___________________WD 3________________

Query      241 SCTDMETGFSSPLMNLNPDGWQGPNSWRMLYGMDINPEKHTVFVADNFGFLYLVDTRSNNRSGQAVLIHKKGSKVVGLHC 320 
WD40-rpts      ___)           (_________________WD 4_________________)      (_________________W

Query      321 NPLQPDLLLSCGNDHFARIWDIRRLVVGSSLYDLAHRRVVNSAYFSPISGCKILTTSQDNRIRVWDSIFGNLDSPSREIV 400 
WD40-rpts      D 5_________________)        (________________WD 6_______________)              

Query      401 HSHDFNRHLTPFRAEWDPKDPSESLAVVGRYISENYNGIALHPIDFIDVSSGQLVAEVMDPNITTISPVNKLHPRDDVLA 480 
WD40-rpts        (____________________WD 7____________________)   (_________________WD 8_______

Query      481 SGSSRSLFIWRPKDDHELVEQKDERKIVICTGTEKKRKHKSKNDESEDDSDVDKPTPTAKGKNLKSRKPITEIRKTSQKM 560 
WD40-rpts      __________)(_________________WD 9_________________)                             

Query      561 KR 562 
WD40-rpts        

9 WD40-repeats found in QUERY=CsaV3_6G016240 (Len=562):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   103-139      6.64  388.90  0.00036       10.0%     29.72
  WD 2:  Seg  5   161-200      7.26  414.47  0.00016       30.0%     54.57
  WD 3:  Seg  9   201-244      7.51  424.75  0.00012       30.0%     56.90
  WD 4:  Seg 14   256-295      7.51  424.99  0.00012        7.5%     39.64
  WD 5:  Seg 17   302-341      6.76  394.11  0.00030       20.0%     55.50
  WD 6:  Seg 21   350-386      7.52  425.14  0.00012       35.0%     40.68
  WD 7:  Seg 25   403-448      3.33  252.22  0.02457        7.5%     38.73
  WD 8:  Seg 29   452-491      4.71  309.34  0.00421       20.0%     50.96
  WD 9:  Seg 33   492-531      6.09  366.42  0.00072       10.0%     33.60

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-139    ---------FLCKMPG-HTTMTCPH-RVAT-EFGVIPASHKNTRNALLY
   WD 2  161-200    -Q------VNCAVIRY-HSRRVTCL-EFHPTNNRLLLSGDKKGQVGVWD
   WD 3  201-244    YD---KVHEKVVYGNI-HSCIVNNM-RFSPTNDGMIYAASSDGTISCTD
   WD 4  256-295    LN------PDGWQGPN-SWRMLYGM-DINP-EKHTVFVADNFGFLYLVD
   WD 5  302-341    -S------GQAVLIHK-KGSKVVGL-HCNPLQPDLLLSCGNDHFARIWD
   WD 6  350-386    SL------YDL----A-HRRVVNSA-YFSPISGCKILTTSQDNRIRVWD
   WD 7  403-448    HDFNRHLTPFRAEWDP-KDPSESLA-VVGR-YISENYNGIALHPIDFID
   WD 8  452-491    -G------QLVAEVMDPNITTISPVNKLHP-RDDVLASGS-SRSLFIWR
   WD 9  492-531    PK------DDHELVEQ-KDERKIVI-CTGT-EKKRKHKSKNDESEDDSD

   WD40 Template    TG------ECLRTLSG-HTSGVTSV-SFSP-DGKRLVSGSEDGTIKVWD