Input parameters:

  Query = CmaCh20G004600 (Len=488)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh20G004600, Len=488):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWEKLSRMNSCYAGMDCELAEICSREIGIARSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDD 80  
WD40-rpts               (_______________WD 1_______________)   (_________________WD 2__________

Query       81 CKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTNDRKIVTSAADGKVRLGEVLDDGRVVAKMLGEHQGSVHELAVEPGS 160 
WD40-rpts      ______)    (__________________WD 3_________________)(____________________WD 4___

Query      161 PHILYSCGEDGLVQHFDLRNSSAIKLFYCTSFAERSKQPPKVVGLNAIVNDPRNPNYFALGGSDEYARLYDLRNCGGGAF 240 
WD40-rpts      ________________)            (__________________WD 5__________________)         

Query      241 STSNRVLDTFCPHHLIQTNNFHITGLAFSNSSELLVTYSDELIYLFQKNMGLGPSPLTVSSENLLRKLKRPQVYSGHRNS 320 
WD40-rpts               (________________WD 6________________)                    (____________

Query      321 ATVKGVNFFGPNSEYVVSGSDCGHIYIWKKKGAVLVKLMVGDRNVVNHIEPHPHLPILATCGIEKNVKIWTPMACDVPPL 400 
WD40-rpts      ______WD 7__________________)   (_________________WD 8________________)   (_____

Query      401 PDDIEQIMESNRQGREDHSRVTLTPDVIMHVLRLQRRQASAFTERRYSAGDIGSDEENEWEAQNLEFLDGNVSFEEDSTE 480 
WD40-rpts      ____________WD 9________________)                                               

Query      481 YSSDCNIS 488 
WD40-rpts              

9 WD40-repeats found in QUERY=CmaCh20G004600 (Len=488):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-45       4.49  300.27  0.00558        7.5%     22.11
  WD 2:  Seg  4    49-87       9.49  506.86  9.2e-06       37.5%     55.07
  WD 3:  Seg  8    92-132      7.61  428.98  0.00010       20.0%     52.13
  WD 4:  Seg 12   133-177      7.17  411.02  0.00018       25.0%     54.10
  WD 5:  Seg 17   190-231      6.53  384.56  0.00041       17.5%     43.75
  WD 6:  Seg 21   250-287      6.84  397.27  0.00028       20.0%     43.14
  WD 7:  Seg 24   308-349      7.41  420.66  0.00013       32.5%     49.58
  WD 8:  Seg 28   353-391      8.50  465.96  3.3e-05       15.0%     56.74
  WD 9:  Seg 32   395-433      6.70  391.50  0.00033       10.0%     25.28

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-45     ---------SC-YAGMDCELAEIC---SRE--IGIA-RSRNFSRRFSASEII
   WD 2   49-87     -LN----LEKK-LNGHDGCVNAVE---FNS--TGDL-LV-SGSDDCKVILWD
   WD 3   92-132    -SE----RFSY-PSGHLDNIFQTK---IMPFTNDRK-IV-TSAADGKVRLGE
   WD 4  133-177    VLDDGRVVAKM-LGEHQGSVHELA---VEP--GSPHILY-SCGEDGLVQHFD
   WD 5  190-231    TSF----AERSKQPPKVVGLNAIV---NDP-RNPNY-FA-LGGSDEYARLYD
   WD 6  250-287    -FC----PHHL-IQTNNFHITGLA---FSN--SSEL-LV-TYS-DELIYLFQ
   WD 7  308-349    -LK----RPQV-YSGHRNSATVKGVNFFGP--NSEY-VV-SGSDCGHIYIWK
   WD 8  353-391    -AV----LVKL-MVGDRNVVNHIE---PHP--HLPI-LA-TCGIEKNVKIWT
   WD 9  395-433    -CD----VPPL-PDDIEQIMESNR---QGR--EDHS-RV-TLTPDVIMHVLR

   WD40 Template    TGE----CLRT-LSGHTSGVTSVS---FSP--DGKR-LV-SGSEDGTIKVWD