WDRR: WD40 Repeat Recognition
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| JobID: 44GRV1659520228 Submitted: 2022-08-03 17:50:28 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79728307 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_7G000230 (Len=1217) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_7G000230, Len=1217): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________)
Query 81 KTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKDDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
WD40-rpts __) (_______________________WD 5_______________________)(_______
Query 241 VDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLER 320
WD40-rpts ____________WD 6___________________) (________________WD 7________________)
Query 321 ERPAFVISGDSLLYTKDRFLRFYEFSTQKDTQVIPIRRPGSISLNQSPRTISYSPTENAILICSDLEGGSYELYTIPKES 400
WD40-rpts
Query 401 IGRGDSVQDAKRGVGGSAVFVARNRFAVLDKSNMQVMIKNIKNEVVKKSVLPIAADAIFYAGTGNLLCRSEDRVVLFDLQ 480
WD40-rpts (_
Query 481 QRVVLGDLQTPFIKYVVWSNDMETVALLSKHVIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS 560
WD40-rpts ________________WD 8_________________)
Query 561 GIIRTLDVPIYITKVSANTIFCLDRDGKTKTIVIDATEYMFKLSLLKKKFDHVMSMIKNSQLCGQAMISYLQQKGFPEVA 640
WD40-rpts
Query 641 LHFVKDERTRFNLALESGSIQIAVASATALDEKDHWYKLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNVDKLSK 720
WD40-rpts
Query 721 MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYITASVHGLHDVAERLAAELGDDVPALPEGKVPSLLMPPS 800
WD40-rpts
Query 801 PVMCGGDWPLLRVMKGIFEGGLDNVGRGVADEEEEAADGDWGEELDMVEVDGLPNGDVTAILEDGEVAEENEEDGGWDLE 880
WD40-rpts
Query 881 DLELPPEAETPKASVSARSFFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFAPLKSMFLDLHGGS 960
WD40-rpts
Query 961 HSHLRAFSSAPVITLAVERGWNESASPNVRGPPALIFNFSQLEEKLKAGYKATTSGKFTEALKLFLSIIHTIPLIVVESK 1040
WD40-rpts
Query 1041 REVDEVKELIIIVKEYILGLQMELKRREVKDNPIRQQELAAYFTHCNLQLPHLRLALQNAMTVCFKAKNLATAGNFARRL 1120
WD40-rpts
Query 1121 LETNPVVENQAKAARQVLQAAERNMTDAAKLNYDFRNPFVICGATHVPIYRGQKDVSCPYCSARFVPSQEGQLCTVCDLA 1200
WD40-rpts
Query 1201 AVGADASGLLCSPSQIR 1217
WD40-rpts
 8 WD40-repeats found in QUERY=CsaV3_7G000230 (Len=1217): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 4.53 301.99 0.00529 20.0% 49.24 WD 2: Seg 4 41-79 7.37 418.98 0.00014 32.5% 57.36 WD 3: Seg 8 83-121 8.45 463.63 3.5e-05 37.5% 57.22 WD 4: Seg 12 125-163 8.93 483.42 1.9e-05 40.0% 55.35 WD 5: Seg 17 181-232 7.57 427.27 0.00011 35.0% 55.36 WD 6: Seg 21 233-276 8.43 463.06 3.6e-05 40.0% 55.16 WD 7: Seg 25 280-317 3.14 244.23 0.03138 15.0% 55.49 WD 8: Seg 43 479-518 3.14 244.51 0.03111 15.0% 39.86Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 T---------------------KFETKSNRVKGLSFHTKRPWILASLHSGVIQLWD WD 2 41-79 -GT------------L----IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 83-121 -HR------------C----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN WD 4 125-163 -RT------------C----ISVLTGHNHYVMCASFHPKDDLVVSASLDQTVRVWD WD 5 181-232 LSQMNTDLFGGVDAVV----KYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWR WD 6 233-276 MND------------TKAWEVDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWD WD 7 280-317 -RT------------G----VQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 479-518 LQQ------------R----VVLGDLQTPFIKYVVWSNDMETVALLSKHVIIIASK WD40 Template TGE------------C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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