WDRR: WD40 Repeat Recognition
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| JobID: 431ZL1659461422 Submitted: 2022-08-03 01:30:22 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79790248 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G021960 (Len=745) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G021960, Len=745): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYGDPQQFQQHQQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQ 80
WD40-rpts (_________________WD 1________________)
Query 81 RRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLWTPTGRR 160
WD40-rpts (______________WD 2
Query 161 LITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDNGGSIKYWQNNMNNVKANKSARKESVRDLRGLL 240
WD40-rpts _____________) (_________________WD 3________________) (_
Query 241 LFIGLADHNELVLNIFCTTYLKFCSCSDDTTVKVWDFARCQEERSLSGNAGHGWDVKSVDWHPTKSLLVSGGKDNHVKLW 320
WD40-rpts _______________WD 4________________)(____________________WD 5___________________
Query 321 DAKSGKELCSFHGHKNTVLGVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDA 400
WD40-rpts ) (_________________WD 6________________) (_________________WD 7____________
Query 401 LYFIGLLGIHETPQIEITNAHDNSVWNLAWHPIGYLLCSGSNDHTTKFCCRNRPGDTARDKFSTGYNEQNPVGSAHMTGN 480
WD40-rpts _____) (_________________WD 8________________)(_______________WD 9__________
Query 481 FAVPDGPTSPGPFPPGLARNEGTIPGIGVAMPLSDTAVMGERKQPHQISMPVGAPPLPPGPHPSLLAANQQHPFQQNPQQ 560
WD40-rpts ____) (_________________WD10________________)
Query 561 FMQQQQQQSQHHQTPHMAPLPMQPQNLPQLQPPSHFPLLPHPNLPRPPQMPTMNMPSQPGSLPSSGPAMPGPMGMQGSMN 640
WD40-rpts
Query 641 QMVPPMRQNHFVGMNQMHSGPMPTSGAPPSGQGFQNSLTNMQGPSNASRAPMYLQGGAFNRTPAGQMQMTPGFNPYQFGG 720
WD40-rpts
Query 721 QPGMPPPQPPGGGPHNTQTPQLREI 745
WD40-rpts
 10 WD40-repeats found in QUERY=CmaCh04G021960 (Len=745): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 39-77 3.65 265.57 0.01630 7.5% -9.31 WD 2: Seg 6 142-174 7.86 439.15 7.5e-05 22.5% 46.81 WD 3: Seg 9 178-216 9.01 486.86 1.7e-05 27.5% 55.54 WD 4: Seg 15 239-276 6.26 373.16 0.00058 30.0% 52.14 WD 5: Seg 19 277-321 8.99 485.82 1.8e-05 40.0% 47.07 WD 6: Seg 23 325-363 9.38 501.95 1.1e-05 30.0% 54.39 WD 7: Seg 27 367-406 6.56 385.74 0.00039 27.5% 55.36 WD 8: Seg 31 412-450 8.83 479.43 2.1e-05 27.5% 50.71 WD 9: Seg 35 451-485 4.19 287.87 0.00819 17.5% 22.07 WD10: Seg 37 512-550 4.78 312.32 0.00384 10.0% 17.35Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 39-77 -TTL-----APEFQHHHHPRHPSGPAP-PPPYEAHGDSFAAKRMRK WD 2 142-174 ------------INKNRCSINRVLWTP-TGRRLITGSQSGEFTLWN WD 3 178-216 -FNF-----EMILQAHDQAIRSMVWSH-NDNWMVSGDNGGSIKYWQ WD 4 239-276 -LLL-----FIGLADHNELVLNI-FCT-TYLKFCSCSDDTTVKVWD WD 5 277-321 FARCQEERSLSGNAGHGWDVKSVDWHP-TKSLLVSGGKDNHVKLWD WD 6 325-363 -GKE-----LCSFHGHKNTVLGVKWNQ-NGNWVLTASKDQIIKLYD WD 7 367-406 -MKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSFDALYFIGL WD 8 412-450 -TPQ-----IEITNAHDNSVWNLAWHP-IGYLLCSGSNDHTTKFCC WD 9 451-485 ----------RNRPGDTARDKFSTGYN-EQNPVGSAHMTGNFAVPD WD10 512-550 -PLS-----DTAVMGERKQPHQISMPV-GAPPLPPGPHPSLLAANQ WD40 Template TGEC-----LRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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