WDRR: WD40 Repeat Recognition
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| JobID: 42KEQ1659505796 Submitted: 2022-08-03 13:49:56 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79745123 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G003490 (Len=601) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G003490, Len=601): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGRGRPSGRLSATYSPATIEYCNGAYSRIPETRCRKTLKMAPTTRSFSFPRVIIEKDTDSEQSSSEEDDDEEPLHDEDED 80
WD40-rpts (_________________WD 1________________)
Query 81 EGENGKDSENDGQRIEEESNNKGKAPITISLKKVCKVCKRTGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVATE 160
WD40-rpts (_________________WD 2
Query 161 FGVIPASHKNTRNALLYVFERQFKPHIPPIKPAYVIPDQVNCAVIRYHSRRVTCLEFHPTNNRLLLSGDKKGQVGVWDYD 240
WD40-rpts ________________) (___________________________WD 3__________________________)
Query 241 KVHEKVVYGNIHSCIVNNMRFSPTNDGMIYAASSDGTISCTDMETGISSSLMNLNPDGWQGPNNWRMLYGMDINPEKHAV 320
WD40-rpts (_________________WD 4_________________) (_________________WD 5_____
Query 321 FVADNFGFLYLVDTRSNNKSGQAVLIHKKGSKVVGLHSNPLQPDLLLSCGNDHFARIWDIRQLVAGSSLHDLAHRRVVNS 400
WD40-rpts ____________) (__________________WD 6_________________) (____________
Query 401 AYFSPISGCKILTTAQDNRIRVWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGIALH 480
WD40-rpts ____WD 7_______________) (____________________WD 8_______________
Query 481 PIDFIDVSTGQLVAEVMDLNITTISPVNKLHPRDDVLASGSSRSLFIWRPKDDHEPTEQKDERKIVICTGTEKKRKHKSK 560
WD40-rpts _____)(___________________WD 9__________________)(_________________WD10_________
Query 561 NDGSDDDDSDVDKFTPTLKGKNLKSTKSATKMRNTPRKMKR 601
WD40-rpts ________)
 10 WD40-repeats found in QUERY=CmaCh20G003490 (Len=601): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-39 4.05 282.06 0.00980 22.5% 14.89 WD 2: Seg 7 139-177 7.52 425.22 0.00012 10.0% 38.14 WD 3: Seg 11 180-238 7.43 421.59 0.00013 30.0% 53.63 WD 4: Seg 15 243-282 7.52 425.38 0.00012 30.0% 55.05 WD 5: Seg 20 294-333 8.02 445.86 6.1e-05 7.5% 38.77 WD 6: Seg 23 339-379 8.35 459.45 4.0e-05 20.0% 54.26 WD 7: Seg 27 388-424 7.46 422.86 0.00012 32.5% 42.95 WD 8: Seg 31 441-486 3.16 245.34 0.03033 7.5% 37.38 WD 9: Seg 34 487-529 4.90 317.14 0.00331 17.5% 48.43 WD10: Seg 38 530-569 6.01 362.88 0.00080 10.0% 25.83Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-39 MG------R---------------------------GRPSGRLSAT-YSP-ATIEYCNGAYSRIPETRCRKTLK WD 2 139-177 -P------C---F------------------LCKMPGHTTMSCPHR-VAT-EFGVIPASHKNTRN-----ALLY WD 3 180-238 ER------Q---FKPHIPPIKPAYVIPDQVNCAVIRYHSRRVTCLE-FHPTNNRLLLSGDKKGQV-----GVWD WD 4 243-282 -H------E---K------------------VVYGNIHSCIVNNMR-FSPTNDGMIYAASSDGTI-----SCTD WD 5 294-333 LN------P---D------------------GWQGPNNWRMLYGMD-INP-EKHAVFVADNFGFL-----YLVD WD 6 339-379 KS------G---Q------------------AVLIHKKGSKVVGLH-SNPLQPDLLLSCGNDHFA-----RIWD WD 7 388-424 SL------H---D------------------L----AHRRVVNSAY-FSPISGCKILTTAQDNRI-----RVWD WD 8 441-486 HDFNRHLTP---F------------------RAEWDPKDPSESLAV-IGR-YISENYNGIALHPI-----DFID WD 9 487-529 VS------TGQLV------------------AEVMDLNITTISPVNKLHP-RDDVLASGS-SRSL-----FIWR WD10 530-569 PK------D---D------------------HEPTEQKDERKIVIC-TGT-EKKRKHKSKNDGSD-----DDDS WD40 Template TG------E---C------------------LRTLSGHTSGVTSVS-FSP-DGKRLVSGSEDGTI-----KVWD |
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