WDRR: WD40 Repeat Recognition
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| JobID: 3ZL6T1352445816 Submitted: 2012-11-09 15:23:36 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 386805133 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = PF3D7_1468000 (Len=1966) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (PF3D7_1468000, Len=1966): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLVCEHLYVNRKLNGNKIKKEIGRFESLCTSQISIFCNLRRNVFSNFNRNDLIDQNIVYLNVCNNETYYNKAHEENDKVK 80
WD40-rpts
Query 81 VYEKEIQNFYKYDKLRYVDEHNNICCNLIKDIFLYGVNLNVDIFILKNSNIIFFLQNVINIYNPLIKSLRVIYTKKDYMI 160
WD40-rpts
Query 161 TCSSLFKDTLIIVLYSSINYSCIQIYDLDKGILKEEISLRDYDYYEKIYIQKENNYFLLITNKNILKVLDSEKKVFIFNV 240
WD40-rpts
Query 241 YLYLEYNNILQYYDFFLILRKKKLYLWNLERTYTGLKLKENILEVDKNMHVNCFCTHGKNIFIVTSKGNLYLWKDLVQKI 320
WD40-rpts
Query 321 EIKRYNVEEPFDKNIHYIHYYDNYITTKGNESIKLWLCKFSLNSISECSCVYIEFEQETKICLNINKIIVHDNFYLILDK 400
WD40-rpts
Query 401 KNCTIYTCKKNNYEDIGIFYNDHNSKIKNIFCLDKNIFSFGANGKLFDYIKKDKQIERTFCLHKFKYSITCVKYLYSEDS 480
WD40-rpts
Query 481 FLYFCVGFNNGVIKIIKMKHLYLDIIYCLKTSNNEIIKIEKSQNSQFISILADEEPYVFFLYKSSNIFMPLGYLKINEAH 560
WD40-rpts (_________________WD 1________________)
Query 561 LKECFYFSYFNSFYILGDNNYFFKIDVKKLEEQIKQEEMSKQVGHSEGNGNGNGNEYINMMEKKKDNKNIYLNDYINDEN 640
WD40-rpts
Query 641 GDVKKDALNNNEQQNNSDYDLSVKYEIIKITFNADERNKRLIKRYKNEHNELNMYNKDTNKINNKNDDGNKYGDNEATNI 720
WD40-rpts
Query 721 EQEGMEEFFEEMEGLENESDNEYKESNSSSNLSDNTYNKMNFYREKINLTQNMQDLHSDNNKDIFILKNKKKNLKRYIEI 800
WD40-rpts
Query 801 LFHNKTIKNKRYENNDELPKNMLSLYLERDNRKIIYKEERNTKNNNINIDHHNNNNNGDNMNYARLKHDTINICCVTKSK 880
WD40-rpts
Query 881 KNRGFFIATQGVKNNYLFFLNLDKKDIIKYKYTDSKEDTHIDIIMPRIIYKIDNKNFLPKRTYIYKMIINEIKDLLFCLT 960
WD40-rpts
Query 961 NNNEIYIFSIKFFFLYYYIKIPVYEKVRNIFINNKNATTTSNNNNNMKKNNNMNNNFQYIFICLNNNKYIQLNFNYPFFY 1040
WD40-rpts
Query 1041 LLNVIKRYHINIKKFMHSFMIPNKMFLSYDSIHQYFIEEIHDYIVEEFIKKRKKKTNLMPFKYEDITDDLNFIIELLEIH 1120
WD40-rpts
Query 1121 NEEEKKNNQEKDDKHAQGQNEKNKNDITDIWDFIQQNKKEQEEEIEEQKKKIDLILNYDQKNISTFFNINSNNMKDVDIQ 1200
WD40-rpts
Query 1201 YSLRDTKEYQRNEEKFRKALLYKQHIHMKINKLKKKYIKLNKRNKFLIDLDYSHYIYEMLQQNIQEIKNVFMYHEQEYDN 1280
WD40-rpts
Query 1281 RIKYLSNKFIRLRYIKNPIYAFNDKNHFYAKSLKMYLKNYTFKKKNRKITTKEKKIKEPKQTLELTTEIKDCLQNFNELR 1360
WD40-rpts
Query 1361 ERNKNVKIINNEEKIEEICIKKKIIKMYEEMLLKLEKMSEERKEMDEPRKIKHISKIIRHYEENKKKLLVQINYIKETFN 1440
WD40-rpts
Query 1441 QYYMALKSRISIKLTHVIEEIEFLKDTLKTEMIKHTENKDNNDQGIDTDIKMVGEVHIKNIVNVNNCNENERIQYELNNI 1520
WD40-rpts
Query 1521 NCEHDKIKKYESFLEHVNNFFSYANKKNDKIYNINWDPLFFEKKYQHYKKEDVERTIEYFIKKCDKEIYNLHIKRIQAIR 1600
WD40-rpts
Query 1601 LIKYISLKVISIDEKNNILIELRKKELKLRRQKRDYIKEMKNIENQINVYVDEMDTLLQEMEIQNQSRDKILEKLKELMG 1680
WD40-rpts
Query 1681 DNTLCYDNLIKCLKKTQDDLSGESDGSEDKCNELEATNSIVDIYNKEEIESIKKENASILSNINNIKKNMELKKNEQRKL 1760
WD40-rpts
Query 1761 NIKKKNIEKEIEIINDEINIIEDDKKKNISEVKFYITLKISKLRNIDYLYDKKKYRLNLASQCTVLSIEQYKDIMTKMDT 1840
WD40-rpts
Query 1841 ITRKKEKLYMKYKYLKKENTELENINNKLQKTVNEKKNQLKNKLKKHDLNFDFNDLEKKYQEKKKKGILQEIKNKEIENN 1920
WD40-rpts
Query 1921 KKINILNKEFDQKMNILNQTRKENTDLLVKINEYIQILKELKNEEN 1966
WD40-rpts
 1 WD40-repeats found in QUERY=PF3D7_1468000 (Len=1966): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 34 503-541 3.94 277.44 0.01131 5.0% 39.64Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 503-541 LDIIYCLKTSNNEIIKIEKSQNSQFISILADEEPYVFFL WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |