Input parameters:

  Query = CmaCh09G004150 (Len=674)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G004150, Len=674):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEEQIANFVSAYLKKKGFKETEQAFQDELRHNKTNSSSSASSIDLDFAKRLLSFSEVENIPARYLEGYSKLRSWAYNSL 80  
WD40-rpts                                                                                      

Query       81 DLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFREDHEMLHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKI 160 
WD40-rpts                                                                                      

Query      161 CQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDAELVTLSGSTQETANQINKKEVQWGLLEDSLEERLEK 240 
WD40-rpts                                                                                      

Query      241 AAGLLSDSEKAEVETKDGDVDENKKRTTEGGKQGASIKKVKKDKTAGAPGKTLRAEANSASMAPRVKPELALPIITTEVE 320 
WD40-rpts                                                                                      

Query      321 QSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISHDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTS 400 
WD40-rpts                         (_________________WD 1________________)                      

Query      401 DPVTGHTSGKRSYTLFQGHSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNASLVCYKGHNYPVWDVQFSPVGHYFASC 480 
WD40-rpts                   (_______________WD 2______________)   (_________________WD 3_______

Query      481 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRF 560 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      561 MASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWSLAFSCEGSLLASGSADCTVKLWDVTSSTKPPRTDENKSGTANRLRSL 640 
WD40-rpts      _____________)   (_________________WD 6________________)                        

Query      641 KTLPTKSTPVYSLRFSRRNLLFAAGALSKSASTA 674 
WD40-rpts                                        

6 WD40-repeats found in QUERY=CmaCh09G004150 (Len=674):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   340-378      8.34  459.35  4.0e-05       30.0%     58.10
  WD 2:  Seg  7   414-448      9.00  486.51  1.7e-05       37.5%     46.47
  WD 3:  Seg 10   452-490      9.46  505.37  9.6e-06       35.0%     54.71
  WD 4:  Seg 14   494-532      9.64  512.95  7.6e-06       32.5%     54.37
  WD 5:  Seg 18   536-574     11.09  572.82  1.2e-06       52.5%     53.32
  WD 6:  Seg 22   578-616     10.85  562.99  1.6e-06       52.5%     56.50

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  340-378    -SVSFYTFINTHNGLNCSSISHDGALVAGGFSDSSLKVWD
   WD 2  414-448    T-----LFQGHSGPVHSATFSPIGDFVLSSSADTTIRLWS
   WD 3  452-490    -NASLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWS
   WD 4  494-532    -IQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWD
   WD 5  536-574    -GECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWD
   WD 6  578-616    -GRCVTPLIGHTSCVWSLAFSCEGSLLASGSADCTVKLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD