WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: 3PZXS1659460862 Submitted: 2022-08-03 01:21:02 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79756166 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G007220 (Len=1591) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G007220, Len=1591): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSKEPKTPSKTDTNLNLEKTIWTSHRKDWDRRCRSVACIWTGTPLSHRVTATAVLNHPPTLYTGGSDGSIIWWNLSLSDS 80
WD40-rpts (_________________WD 1________________)
Query 81 SSEIEPVAVLCGHAATIVDLGICYPLISGTSETEISSDAEVNSTSEICGALVSVCSDGVLCIWSRRSGHCRHRRKLPAWV 160
WD40-rpts (____________________________WD 2___________________________) (_____
Query 161 GSPSMVRTIPSKPRYVCIGCCFIDSAHSSDHHSVDHAERSEASTNKEYRHRNHSKCSFVTFDTYTLSIVQTVVHGNLSIG 240
WD40-rpts ___________WD 3_______________)
Query 241 SLRYMAIVSPLTGEGNHSAVLVDSFGRLQMVSTSNYQDKVDEASLHNSSQVDISIWDEVLSERGLVLSVATKRNIIAFLL 320
WD40-rpts (_________________WD 4________
Query 321 PDRCVFKLLINGLMVGELSFTDILFGVNEVTSQTHAAGAMFLEGGDELNNMDSQTCPETFVENFAVWNSGGHAIVYMISF 400
WD40-rpts ________) (___________________WD 5___________________) (________
Query 401 ANNVFEYKLLYEIPASFNSSDARLAISFIQLNKHVIRVESLSSQIEEPYHWTSSITIWSLQEKHHVQGNSYLKCKMVGES 480
WD40-rpts _________WD 6________________) (____________
Query 481 SSLAEWISDSTCYSEFVGQYGVGSELNSQRLSDSSSGSVNDLYLGGGNNFVQKGQIISSSMVISDSLSTPYAVVYGYFSG 560
WD40-rpts ________WD 7____________________) (____________
Query 561 DIQILKLDLFQDLPSHSGSPHCEVNHHVPQLYLSGHMGPVLCLAVHRIVGKGNEQVLLSGSMDCTIRIWDLESGKLIMVM 640
WD40-rpts _____WD 8________________)(___________________WD 9___________________) (______
Query 641 HHHVAPVRQIILPPSHTDHPWSNCFLSVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDGVRGYIACMCSNHSSTSDT 720
WD40-rpts ______________WD10___________________) (_____________________WD11_____________
Query 721 VDILYIWDIKTGARERIIPGEASHSVFDYFCKGVGKCLSGSVLNGNTSASSLFYTIVEDGSINDSVSSYGQSTDTLEAMA 800
WD40-rpts _______) (____________________WD12___________________) (_________________WD1
Query 801 HLTNKVESGMSNGHARRQNSAQSFLNSLYNSESEQHPIKCSCPFPGIATISFDLTALMSFNQKAKSMINRNNIEDTAVPK 880
WD40-rpts 3_________________)(_______________________WD14______________________)
Query 881 DQQARMSSPNARDNKMDDPLAHEISTEYSEELNWISSYEECLIRFSLSFLHVWGVDSDLDNLLVTDMKLKKPESFIVASG 960
WD40-rpts
Query 961 LQGDKGSLTVTFRGLKAVLELWKSSAEFCAIRSLMILSLAQHMISLFHSGSSASSALAAFYMRNFVDKVPDIKPPLLQLL 1040
WD40-rpts (_________________________________
Query 1041 VSFWQDESEHVRMAARSLFHCAASRAIPLPLRGRRSTEHGGLSEIGDSDNELDCLNVDEKSDNVISSACIPKSEGVSQVE 1120
WD40-rpts ______WD15______________________________________)
Query 1121 EFIVRNWLESYEIQDWISCVGGKSQDAMTSHLIVAAALSIWYRSLVKKILPMLVVHSLVKLVKSMNDKYSSTAAELLAEG 1200
WD40-rpts
Query 1201 MDSTWKACLGNEIPHLIEDVLLQLEYVSGPSANQLVQNSALPVGIRETLVEVLLPNLAMADIPGFLTIIESQIWSTASDS 1280
WD40-rpts
Query 1281 PVHLLSLKTLIRVVRGCPRNLAPYLDKAVNFILQIMDPSNSVLRKICYQSSMAALKEVVHVFPMVSLNDSWTRLAVGDVI 1360
WD40-rpts
Query 1361 GEINSASIRVYDLQSVTKIKVLDASGPPGLPSLLAAGSEKAVRTSISALSFSPDGEGVVAFSEHGLMIRWWSVGSVWWEK 1440
WD40-rpts (______________________WD16______________________)
Query 1441 LSRNFVPVQCTKVIFVSPWEGFSPNSSRLSIMASATDSSDRQADVKDNARDLSHADILKILIHSLDLSYRLEWTGERKLQ 1520
WD40-rpts
Query 1521 LTRHGNDFHPLACLPLVQGFRAVVLYFLIKSAHAQHEEFKRRLIVAFAGYIFSCLFDGEMKEKSLICIFLV 1591
WD40-rpts
 16 WD40-repeats found in QUERY=CmaCh04G007220 (Len=1591): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 36-74 6.76 393.71 0.00031 25.0% 45.58 WD 2: Seg 6 84-144 4.64 306.21 0.00464 30.0% 40.10 WD 3: Seg 11 155-191 4.40 296.23 0.00632 15.0% 13.24 WD 4: Seg 20 291-329 3.71 268.04 0.01511 5.0% 51.71 WD 5: Seg 25 345-388 6.53 384.21 0.00041 15.0% 23.23 WD 6: Seg 27 392-430 5.53 343.07 0.00148 7.5% 34.37 WD 7: Seg 34 468-513 4.18 287.48 0.00829 20.0% 20.80 WD 8: Seg 40 548-586 2.88 233.72 0.04323 17.5% 10.86 WD 9: Seg 42 587-630 6.51 383.39 0.00042 35.0% 49.89 WD10: Seg 46 634-678 6.51 383.54 0.00042 17.5% 56.04 WD11: Seg 50 682-728 6.03 363.73 0.00078 15.0% 49.15 WD12: Seg 54 732-776 3.71 268.04 0.01511 20.0% 39.46 WD13: Seg 58 780-819 5.96 360.73 0.00086 12.5% 48.35 WD14: Seg 62 820-870 4.52 301.37 0.00539 10.0% 28.19 WD15: Seg 71 1007-1089 3.76 269.87 0.01428 10.0% -3.56 WD16: Seg 79 1383-1432 5.63 347.05 0.00131 30.0% 30.64Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 36-74 -VAC-----------IWTG---------TPLSH-R------VT----AT----------------------AV-----LNH------PPTLYT--------------------------------------------GGS-DGS--------IIWWN WD 2 84-144 -IEP-----------VAVL---------CGHAA-T------IV----DLGICYPLISGTSETEISSDAEVNST-----SEI------CGALVS--------------------------------------------VCS-DGV--------LCIWS WD 3 155-191 ---K-----------LPAW---------VGSPS-M------VR----TI----------------------PS-----KPR------YVCIGC--------------------------------------------CFI-DSA--------HSSDH WD 4 291-329 -VDI-----------SIWD---------EVLSE-R------GL----VL----------------------SV-----ATK------RNIIAF--------------------------------------------LLP-DRC--------VFKLL WD 5 345-388 FGVN-----------EVTS---------QTHAA-G------AMFLEGGD----------------------EL-----NNM------DSQTCP--------------------------------------------ETF-VEN--------FAVWN WD 6 392-430 -HAI-----------VYMI---------SFANN-V------FE----YK----------------------LL-----YEI------PASFNS--------------------------------------------SDA-RLA--------ISFIQ WD 7 468-513 GNSY-----------LKCK---------MVGES-SSLAEWISD----ST----------------------CY-----SEF------VGQYGV--------------------------------------------GSE-LNS--------QRLSD WD 8 548-586 -STP-----------YAVV---------YGYFS-G------DI----QI----------------------LK-----LDL------FQDLPS--------------------------------------------HSG-SPH--------CEVNH WD 9 587-630 -HVP-----------QLYL---------SGHMG-P------VL----CL----------------------AVHRIVGKGN------EQVLLS--------------------------------------------GSM-DCT--------IRIWD WD10 634-678 -GKL-----------IMVM---------HHHVA-P------VR----QI----------------------IL-----PPSHTDHPWSNCFLS--------------------------------------------VGE-DSC--------VALAS WD11 682-728 -LKV-----------ERMF---------PGHRN-Y------PE----KV----------------------VW-----DGV------RGYIAC--------------------------------------------MCS-NHSSTSDTVDILYIWD WD12 732-776 -GAR-----------ERII---------PGEASHS------VF----DY----------------------FC-----KGV------GKCLSG---------------------------------------SVLNGNTS-ASS--------LFYTI WD13 780-819 -GSI-----------NDSV---------SSYGQ-S------TD----TL---------------------EAM-----AHL------TNKVES--------------------------------------------GMS-NGH--------ARRQN WD14 820-870 SAQSFLNSLYNSESEQHPI---------KCSCP-F------PG----IA----------------------TI-----SFD------LTALMS--------------------------------------------FNQ-KAK--------SMINR WD15 1007-1089 -FHS-----------GSSA---------SSALA-A------FY----MR----------------------NF-----VDK------VPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLRGRRSTEHGG-LSE--------IGDSD WD16 1383-1432 DASG-----------PPGLPSLLAAGSEKAVRT-S------IS----AL----------------------SF-----SPD------GEGVVA--------------------------------------------FSEHGLM--------IRWWS WD40 Template TGEC-----------LRTL---------SGHTS-G------VT----SV----------------------SF-----SPD------GKRLVS--------------------------------------------GSE-DGT--------IKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |