WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: 3OGBS1659500889 Submitted: 2022-08-03 12:28:09 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749453 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh13G006680 (Len=1004) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh13G006680, Len=1004): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAKRGYKLQEFAAHSANVNCLRIGKKACRLFITGGDDYKVNLWAIGKSNSLMSLCGHTNPVESVAFDSAEILVLAGASSG 80
WD40-rpts (__________________WD 1_________________)(__________________WD 2_____________
Query 81 AIKLWDIEEAKMVRTLSGHRSNCTAVEFHPFGEFFASGSRDTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSG 160
WD40-rpts _____) (_________________WD 3________________) (_________________WD 4_______
Query 161 GFDSAVKVWDLTAGKLMHDFKFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEAAGVRAITFHPDGRT 240
WD40-rpts _________) (_________________WD 5________________) (________________WD 6____
Query 241 LFSGLDDSLKVYSWEPVICHDSVDMGWSTLGDICIHDGKLLSCSFYRNSVGVWVADVALIEPYGANPISGQKEPNDQKSN 320
WD40-rpts ____________) (________________WD 7________________)(____________________WD 8_
Query 321 SAFKNSLGSKSIGAGLMTSNLQSMSPDYETKEIKNIYVDTTGGKPVAPQKEESLNSPKVVFALDSKKISYDASKEQSPAS 400
WD40-rpts ___________________)(________________WD 9________________)
Query 401 RVEMKSNEVSRDKPPVVPCASPEVKDSPSSVRESITFSKTRRGMLLRPAHIRKPSNSKMDFEKLSVDSSRKADLERLPVE 480
WD40-rpts
Query 481 DSVSICHTTSDLNKAPEPNLKTSVLSEETHKDSHRTNSNIISIEEKFEKIPSASAETTSEQESRNKSVESSKGTNPVKFV 560
WD40-rpts
Query 561 NGVAVVSGRTRSLVERFERRERTNDVQATISPPSVLESEKTREQTNSFEAQVVTPQILETEKTHEQTNDCRVQEVAVPSL 640
WD40-rpts
Query 641 VSETEKTREETNNYEVQAVAIPSHISETQKAREQNNDYEVRVMVTPRTPETKRTAPNYEGKTRNNYEAKARNNYEAKTTP 720
WD40-rpts
Query 721 IPSRVSKTDKTDNFQVTFEVVWNAIQLRNLGAFSGKLFLSCWQRMANKGEPQISGRDSTSANDRDVIEDLMQSHDVFLST 800
WD40-rpts
Query 801 LRSRLTKLQVIRHFWERNDMKGAINAMTKLPDHSVHADVISVLIEKMDVLTLDLFSCLLPVLVGLLDSKIERHASLSMEI 880
WD40-rpts
Query 881 LLKLVAVFGHVISSAVSAPPVVGVDLHAEQRVQCCKQCFTHLQKIQKILPSFVRRGGSLARSAQELNLADTPNRKNVEMQ 960
WD40-rpts
Query 961 HLYKLKLQVTSHNFSWVLASSSSFVSCKVTCRDFLRTTSNQKEY 1004
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh13G006680 (Len=1004): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 4-44 7.35 418.13 0.00014 20.0% 54.54 WD 2: Seg 5 45-86 9.36 501.30 1.1e-05 40.0% 56.04 WD 3: Seg 9 90-128 10.35 542.25 3.1e-06 47.5% 57.26 WD 4: Seg 13 132-170 10.53 549.66 2.4e-06 45.0% 55.80 WD 5: Seg 17 174-212 9.30 498.69 1.2e-05 32.5% 56.08 WD 6: Seg 21 216-253 7.32 417.02 0.00015 32.5% 56.56 WD 7: Seg 25 257-294 5.19 329.18 0.00228 20.0% 56.86 WD 8: Seg 29 295-340 6.01 363.08 0.00080 20.0% 37.80 WD 9: Seg 32 341-378 3.83 272.93 0.01299 7.5% 5.61Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 4-44 RG--YKL------QEFAAHSANVNCLRIGKKACRLFITGGDDYKVNLWA WD 2 45-86 IGKSNSL------MSLCGHTNPVESVAFDSAEIL-VLAGASSGAIKLWD WD 3 90-128 -A--KMV------RTLSGHRSNCTAVEFHPFGEF-FASGSRDTNLKIWD WD 4 132-170 -K--GCI------HTYKGHTQGISTIKFTPDGRW-VVSGGFDSAVKVWD WD 5 174-212 -G--KLM------HDFKFHEGPIRSIDFHPLEFL-LATGSADKTVKFWD WD 6 216-253 -F--ELI------GSTRPEAAGVRAITFHPDGRT-LFSGL-DDSLKVYS WD 7 257-294 -V--ICH------DSVDMGWSTLGDICIH-DGKL-LSCSFYRNSVGVWV WD 8 295-340 AD--VALIEPYGANPISGQKEPNDQKSNSAFKNS-LGSKSIGAGLMTSN WD 9 341-378 LQ--S--------MSPDYETKEIKNIYVDTTGGK-PVAPQKEESLNSPK WD40 Template TG--ECL------RTLSGHTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |