WDRR: WD40 Repeat Recognition
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| JobID: 3OA1N1659497836 Submitted: 2022-08-03 11:37:16 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79753622 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh10G004860 (Len=539) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh10G004860, Len=539): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASQALTEYERKRLENIRRNDEMMAALKLQSKASELSAASKRQRVETKSEKVYPKSKPKVETPIVLRRSLRARGIPPDAK 80
WD40-rpts
Query 81 SVSDDITEPATKIRKSDPKSMPSRRVSGPLEMIEVCSERESHRSLIESIVGISIKSLESRSVKEELVDDVKDFKLEEGNG 160
WD40-rpts (____________________________WD
Query 161 SFPKEIKTEGGGNENCLKMEPIDNYPNLIKTQTEELTSDIKGHWTRSIKMEHKTDGSRLKVGSLVLNADNIARVVPGRIM 240
WD40-rpts 1___________________________) (_________________WD 2________________)________
Query 241 AVRFFPCRDSRMIVVGNKFGEVGFWNADHQSEEGNGVYLYHPHSGPISGISIQWHALSKVHTSCYDGFIRLMDAEKEMFD 320
WD40-rpts ______WD 3_______________) (_________________WD 4_________________) (____
Query 321 LLYRSEYTVYSLSQQSNDANCLYFAEGRGGLNILDKRTGNCPMEWMLHEDRINTIDFSVENCNIMATGSSDGTACLWDLR 400
WD40-rpts _____________WD 5_________________) (_________________WD 6_________________)
Query 401 SVNAEKPLKTINHKRAIHSAYFSPSGRFIATTSFDDNVGITGGVNFKDTLMIPHDNQTGRWISSFRAIWGWDDSYIFIGN 480
WD40-rpts (_______________WD 7______________) (________________WD 8_______
Query 481 MKRAVDVISRAQRKKVFVLQSPNISAIPCRFDAHPYDVGTLAGATSGGQVYMWTMSQDI 539
WD40-rpts ________) (__________________WD 9__________________)
 9 WD40-repeats found in QUERY=CmaCh10G004860 (Len=539): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 130-190 5.24 331.16 0.00214 15.0% 40.69 WD 2: Seg 6 194-232 6.27 373.74 0.00057 22.5% 33.45 WD 3: Seg 9 231-266 6.15 368.58 0.00067 20.0% 47.30 WD 4: Seg 13 274-313 7.48 423.66 0.00012 17.5% 55.13 WD 5: Seg 17 316-355 6.92 400.69 0.00025 25.0% 56.46 WD 6: Seg 21 359-398 8.57 468.75 3.0e-05 30.0% 51.46 WD 7: Seg 25 408-442 7.68 431.94 9.4e-05 20.0% 48.27 WD 8: Seg 29 453-489 6.80 395.54 0.00029 10.0% 37.53 WD 9: Seg 32 493-534 6.84 397.26 0.00028 12.5% 51.77Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 130-190 VGISIKSLESRSVKEELVDDVKDFKLEEGNGSFPKEI---KT-EG--GGNENCLKMEPIDNYPNLIK WD 2 194-232 -E-------------------ELTSDIKGHWTRSIKM---EH-KT--DG--SRLKVGSLVLNADNIA WD 3 231-266 -------------------------IARVVPGRIMAV---RF-FPCRDS--RMIVVGNKFGEVGFWN WD 4 274-313 -G-------------------NGVYLYHPHSGPISGI---SI-QW--HA-LSKVHTSCYDGFIRLMD WD 5 316-355 -K-------------------EMFDLLYRSEYTVYSL---SQQSN--DA--NCLYFAEGRGGLNILD WD 6 359-398 -G-------------------NCPMEWMLHEDRINTI---DF-SV--EN-CNIMATGSSDGTACLWD WD 7 408-442 ------------------------LKTINHKRAIHSA---YF-SP--SG--RFIATTSFDDNVGITG WD 8 453-489 PH-------------------D---NQTGRWISSFRA---IW-GW--DD--SYIFIGNMKRAVDVIS WD 9 493-534 -R-------------------KKVFVLQSPNISAIPCRFDAH-PY--DV--GTLAGATSGGQVYMWT WD40 Template TG-------------------ECLRTLSGHTSGVTSV---SF-SP--DG--KRLVSGSEDGTIKVWD |
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