WDRR: WD40 Repeat Recognition
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| JobID: 3O3UD1659516971 Submitted: 2022-08-03 16:56:11 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79727662 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_4G025990 (Len=1239) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_4G025990, Len=1239): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKPNRKLKKTDSSSKLVLEEIIGTTTKNNNGLASNVNSAICVYLAGCVVVVHNVDSGTQSHLVVPHRSCKPLSCVAMSLD 80
WD40-rpts (_________________WD 1________________) (___________________WD 2
Query 81 GRFVAAGESGPQPAVFVWELSGMVFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKLKASSSCTAISS 160
WD40-rpts __________________) (________________WD 3_______________) (_________________
Query 161 VSFSSDSKSLLTAGKKHLKFWTLTSPKTHFNLGTSSLSLHGKPVNLGPHQGSSFVSIASGFWEDGSSSEVFPMYALTETG 240
WD40-rpts WD 4_________________) (___________________WD 5__________________)
Query 241 ELCLVNSGFSVTKSVNLKVDKSFAVSASSKLIACACSNGIVQLFDAENLQYGGSLVYSRSKQFDGAGNIVYPMKDDGNVL 320
WD40-rpts (_________________WD 6_________________)(________________WD 7______________
Query 321 KNLPALPDAIACYFSTSEKLVVIYGDHFLNIWDIHDSKQATRTCVLVSHSACIWDIKVLCCENMHDPSLACVARGCSGGV 400
WD40-rpts __) (______________________WD 8_______
Query 401 SFATCSADGTIRLWDLALESDSEDAMDTQVRRASTTRFESAGIFERETVEAGCSTQSFRSLAASSDGKYLAAGDCDGNIH 480
WD40-rpts ______________) (______________WD 9___________
Query 481 IFNLLTSDYTCLQGAHDAEVLSLSFSLVSRNDAISKEVVQGHYYLASASRDRIIHLYNVERNFDLTDSIVDHSAAVTSVK 560
WD40-rpts __) (_______________________WD10_______________________) (_________________
Query 561 ISCNGHKIISCSADRSLIFRDFTTTDSGHMISRSHHQMASQGTVYDMAIDPKRDVVVTVGQDKKINTFDVASGKLIRSFR 640
WD40-rpts WD11________________) (_______________WD12_______________) (_______
Query 641 LEKDFGEPIKVAVDPSCSYLVCSYSNKSICMHDFMTGEMVVQAMGHGEVITGVIFTPDCKRIISIGGDGCIFVWRLPAFL 720
WD40-rpts ___________WD13_________________) (_________________WD14________________)
Query 721 SSSMHQKMNEGSGPLSPGIMTKPIPFGRIMIYEEDGNEAKQHATYSGDDSMQNGFQVHHQGEAAPEATFRFSISRLPRWA 800
WD40-rpts (_________________WD15________________)(_________________WD16_______________
Query 801 QYKVTNSDSAGINHESTPLQKSPCSLVVDDEGNASPPPEFQICCESSDHILRSVDSCTSSLSGNSSDYGDTNGSNVPQET 880
WD40-rpts __)
Query 881 FSGHPGMENRWLSIYNVCLDLPSSPEMQKFMDRKSVSSTNGLHDAAKLPASNGCSSGQASNHIDIGGELTSSKIAIFHKP 960
WD40-rpts (________________WD17_______________)
Query 961 VPSKHESHTRVNEVHSGEMGELHSSNVESEKQAIGDSSPCRSKAEDSDLFKLHFGSLSMSHKRKKSSARGRYSSKYVLQD 1040
WD40-rpts (_____________WD18_____________)
Query 1041 CLGSTKRLRMLPYDCGSKTLNYVDEATNHSPSEILPSQVLAEQPLCITRMTDTLLRSKSSHFTQNESYPGEKESIRAKLT 1120
WD40-rpts
Query 1121 KEGNNDSFPVPSEMQEKRTSCREVLLGLDAAAENAVQFFSRLVTPACHEDSLPLQESGLEFYDEAAMLLPAILEKINAVA 1200
WD40-rpts
Query 1201 KLVQCKNKDKCESTKNVIITESKPLLETFAKNHSEKVEI 1239
WD40-rpts
 18 WD40-repeats found in QUERY=CsaV3_4G025990 (Len=1239): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 15-53 4.32 292.92 0.00701 12.5% 44.59 WD 2: Seg 6 57-99 5.51 342.36 0.00151 25.0% 57.41 WD 3: Seg 10 103-139 7.47 423.07 0.00012 45.0% 55.58 WD 4: Seg 14 143-182 6.11 367.21 0.00070 32.5% 53.70 WD 5: Seg 19 193-235 4.16 286.46 0.00855 12.5% 26.22 WD 6: Seg 24 246-285 7.23 413.24 0.00017 17.5% 46.60 WD 7: Seg 28 286-323 3.21 247.42 0.02846 15.0% 34.23 WD 8: Seg 36 367-415 6.65 389.49 0.00035 27.5% 52.63 WD 9: Seg 41 451-483 7.37 419.12 0.00014 27.5% 47.74 WD10: Seg 44 487-538 6.59 386.95 0.00038 27.5% 54.34 WD11: Seg 48 543-581 8.56 468.36 3.0e-05 27.5% 54.10 WD12: Seg 53 594-629 6.76 393.99 0.00030 15.0% 46.57 WD13: Seg 56 633-673 6.80 395.49 0.00029 20.0% 56.53 WD14: Seg 60 677-715 9.72 516.14 6.9e-06 42.5% 57.51 WD15: Seg 64 725-763 4.80 313.13 0.00375 15.0% 36.21 WD16: Seg 67 764-803 7.60 428.70 0.00010 10.0% 37.00 WD17: Seg 73 911-947 5.19 328.93 0.00230 17.5% -3.27 WD18: Seg 77 992-1023 3.96 278.25 0.01103 17.5% 18.16Multiple sequence alignment of 18 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 15-53 -K--------LVLEEIIGTT--T---KNNNGLA-SNVNSA-------------ICVYLA--GCVVVVHN WD 2 57-99 -G--------TQSHLVVPHR--S-CKPLSCVAM-SLDGRF-------------VAAGESGPQPAVFVWE WD 3 103-139 -M--------VFVSELKGHL--Y---GVACLAF-SPDGKY-------------LVSV----GGYIYIWD WD 4 143-182 -T--------ALLTKLKASS--S-CTAISSVSF-SSDSKS-------------LLTAG---KKHLKFWT WD 5 193-235 GT--------SSLSLHGKPV--NLGPHQGSSFV-SIASGF-------------WEDGSS--SEVFPMYA WD 6 246-285 NS--------GFSVTKSVNL--K---VDKSFAV-SASSKL-------------IACACS--NGIVQLFD WD 7 286-323 AE--------N--LQYGGSL--V---YSRSKQF-DGAGNI-------------VYPMKD--DGNVLKNL WD 8 367-415 VSHSACIWDIKVLCCENMHD--P---SLACVARGCSGGVS-------------FATCSA--DGTIRLWD WD 9 451-483 ---------------AGCST--Q---SFRSLAA-SSDGKY-------------LAAGDC--DGNIHIFN WD10 487-538 -S--------DYTCLQGAHD--A---EVLSLSF-SLVSRNDAISKEVVQGHYYLASASR--DRIIHLYN WD11 543-581 -F--------DLTDSIVDHS--A---AVTSVKI-SCNGHK-------------IISCSA--DRSLIFRD WD12 594-629 ------------SHHQMASQ--G---TVYDMAI-DPKRDV-------------VVTVGQ--DKKINTFD WD13 633-673 -G--------KLIRSFRLEKDFG---EPIKVAV-DPSCSY-------------LVCSYS--NKSICMHD WD14 677-715 -G--------EMVVQAMGHG--E---VITGVIF-TPDCKR-------------IISIGG--DGCIFVWR WD15 725-763 -H--------QKMNEGSGPL--S---PGIMTKP-IPFGRI-------------MIYEED--GNEAKQHA WD16 764-803 TY--------SGDDSMQNGF--Q---VHHQGEA-APEATF-------------RFSISR--LPRWAQYK WD17 911-947 MD-----------RKSVSST--N---GLHDAAK-LPASNG-------------CSSGQA--SNHIDIGG WD18 992-1023 --------------QAIGDS--S---PCRSKAE-DSDLFK-------------LHFGSL----SMSHKR WD40 Template TG--------ECLRTLSGHT--S---GVTSVSF-SPDGKR-------------LVSGSE--DGTIKVWD |
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