WDRR: WD40 Repeat Recognition
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| JobID: 3O3OU1659516604 Submitted: 2022-08-03 16:50:04 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79729980 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_4G006130 (Len=1284) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_4G006130, Len=1284): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAIVSPLTGEGNYSAAIVDSFGRLQMISLSKESDQEVDQASLQNSSQVNIPVWTDVLSERGQVVSVAIQHNVIAFLLPDH 80
WD40-rpts (_________________WD 1________________) (_______________WD 2_________
Query 81 CVFKLLLSGLVVGELSFTDSIFGINEFTSEAHVSGAMFLDGRDELNIRNNQECHETFVEIFAVWNSIGHAVIYTISITNK 160
WD40-rpts _____) (___________________WD 3__________________) (___________
Query 161 IFEYKPLYEIPASCNSSSVGFSISFVQLNQHFIRIESLSSQIEEPFHWTSNITIWALQEKQPTHGKLLKCRMVGESSSLT 240
WD40-rpts ______WD 4________________)
Query 241 EWIQDSTFHSEFVGKYVVGSGLKSDSSSDSVNDLYFGDCNNFVQKGQIISSSMVISDSLSTPYAVVYGYSSGDVQILKLD 320
WD40-rpts (_________________WD 5________________)
Query 321 LFQGLSSHRASPHCEVNHVPQLYLSGHTGPVLCLAVHRLVSKNNEQFLLSGSMDCTIRIWGLESGNLVMVMHHHVAPVRQ 400
WD40-rpts (___________________WD 6___________________) (_______________
Query 401 IILPPAHTDHPWSDCFLSVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDILYIWDI 480
WD40-rpts _____WD 7___________________) (_____________________WD 8____________________)
Query 481 KTGARERIIPGTASQSVFDNFCKGIGKSFSGSILNGNTSASSLLFTTIEDGSVSDSLSSNGKSANTLKAMADLSNKVESQ 560
WD40-rpts (____________________WD 9___________________) (_________________WD10________
Query 561 TSNGQARSRKSTKSFQNSLYNFESGRQPIKCSCPFPGIATMSFDLTPLMGFNQKFKSFANRTNLQDTAVLKDQQARMSSP 640
WD40-rpts _________)(__________________WD11_________________) (_________________WD12___
Query 641 SARDKKMDDSLVHEISTGSNEELNWISLYEECLIRFSLSFLHVWGVDSDLDNLLVTDMKLKKPESFIVASGLQGDKGSLT 720
WD40-rpts _____________)
Query 721 VSFPGMRAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNFVDKVPDIKPPLLQLLVSFWQDESE 800
WD40-rpts
Query 801 HVRMAARSLFHCAASRSIPLSLRGGKSIEHGSSSEIGDIDTELNGLSMNEKPDYGISSDCFPKSEEVSQVEEFNIRTWLE 880
WD40-rpts
Query 881 SYEMHDWISCVGGTSQDAMTSHIIVAAALAIWYRSLVKKSLPMLVVHSLVKLVKSMNEKYSSTAAELLAEGMESTWKTCL 960
WD40-rpts
Query 961 GNEIPHLIEDVLLQLEYMSGLSQNQLVQNSSLSVGIRETLVEVLLPNLAMADIPGFLTVIESQIWSTASDSPVHLVSLKT 1040
WD40-rpts
Query 1041 LIRVVRGSPRNLAPYLDKAVNFILQIMDPSNSVMRKICYHSSMAALKEVVHVFPMVSLNDSWTRLAVGDVIGEINSANIR 1120
WD40-rpts
Query 1121 VYDLQSVTKIKVLDATGPPGLPSLLPAGSEMPLRISISALSFSPDGEGVVAFSEHGLMIRWWSVGSVWWEKLSRNFVPVQ 1200
WD40-rpts (______________________WD13______________________)
Query 1201 CTKVIFVPPWEGFSPNSSRLSIMASATERDTQAVDVQDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELG 1280
WD40-rpts
Query 1281 TFQI 1284
WD40-rpts
 13 WD40-repeats found in QUERY=CsaV3_4G006130 (Len=1284): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-39 4.66 307.21 0.00450 15.0% 24.35 WD 2: Seg 3 52-86 3.24 248.43 0.02760 7.5% 45.13 WD 3: Seg 7 103-145 3.82 272.58 0.01313 17.5% 14.22 WD 4: Seg 9 149-187 4.72 309.55 0.00419 12.5% 27.07 WD 5: Seg 18 282-320 4.52 301.35 0.00540 12.5% 34.66 WD 6: Seg 22 338-381 6.67 390.20 0.00034 35.0% 52.20 WD 7: Seg 26 385-429 6.12 367.64 0.00069 17.5% 56.31 WD 8: Seg 30 433-479 5.55 344.11 0.00143 15.0% 49.48 WD 9: Seg 34 483-527 5.92 359.38 0.00089 17.5% 55.55 WD10: Seg 38 531-570 5.75 352.08 0.00112 15.0% 49.42 WD11: Seg 42 571-611 3.68 266.80 0.01570 17.5% 36.81 WD12: Seg 46 616-654 5.06 323.70 0.00270 5.0% 5.80 WD13: Seg 58 1134-1183 5.49 341.47 0.00156 30.0% 32.60Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-39 -MAIVS-PL---------TGEGNY------SAAI----VD-----SFG------RLQMISLSK-ES--------DQEVDQ WD 2 52-86 V------WT---------DVLSER------GQVV----SV-----AIQ------HNVIAFLLP-DH--------CVFKLL WD 3 103-145 -GINEF-TS---------EAHVSG------AMFLDGRDEL-----NIR------NNQECHETF-VE--------IFAVWN WD 4 149-187 -HAVIY-TI---------SITNKI------FEYK----PL-----YEI------PASCNSSSV-GF--------SISFVQ WD 5 282-320 -FVQKG-QI---------ISSSMV------ISDS----LS-----TPY------AVVYGYSSG-DV--------QILKLD WD 6 338-381 -HVPQL-YL---------SGHTGP------VLCL----AVHRLVSKNN------EQFLLSGSM-DC--------TIRIWG WD 7 385-429 -GNLVM-VM---------HHHVAP------VRQI----IL-----PPAHTDHPWSDCFLSVGE-DS--------CVALAS WD 8 433-479 -LKVER-MF---------PGHRNY------PEKV----VW-----DSV------RGYIACMCS-NHSSTSDTVDILYIWD WD 9 483-527 -GARER-II---------PGTASQSVFDNFCKGI----GK-----SFS------GSILNGNTS-AS--------SLLFTT WD10 531-570 -GSVSD-SL---------SSNGKS------ANTL----KA-----MAD-----LSNKVESQTS-NG--------QARSRK WD11 571-611 STKSFQNSL---------YNFESG------RQPI----KC-----SCP------FPGIATMSF-DL--------TPLMGF WD12 616-654 -KSFAN-RT---------NLQDTA------VLKD----QQ-----ARM------SSPSARDKK-MD--------DSLVHE WD13 1134-1183 DATGPP-GLPSLLPAGSEMPLRIS------ISAL----SF-----SPD------GEGVVAFSEHGL--------MIRWWS WD40 Template TGECLR-TL---------SGHTSG------VTSV----SF-----SPD------GKRLVSGSE-DG--------TIKVWD |
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