WDRR: WD40 Repeat Recognition
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| JobID: 3MZXT1659460488 Submitted: 2022-08-03 01:14:48 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79787178 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh03G003090 (Len=1362) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh03G003090, Len=1362): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MALGDLMASRISQSSLAVVSSNHVDDCTSNHDDDGDLVSLRRDSDAASSSYGNAAISTATTMVYLPQTIVFCELRHDAFE 80
WD40-rpts
Query 81 ACLPAGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSVQYERW 160
WD40-rpts
Query 161 QPRARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYV 240
WD40-rpts
Query 241 FDCSAAGMIVNAFTELHDPAGSTRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLRESLDDSLID 320
WD40-rpts
Query 321 KIPGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPSTHQH 400
WD40-rpts
Query 401 HMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQVLLSQGHRFRALVLLGR 480
WD40-rpts
Query 481 FLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMA 560
WD40-rpts
Query 561 AFVLAVIVDGHRRGQEACIEANLEANLIHVCLKHLRSSTPNDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAPAVF 640
WD40-rpts
Query 641 NSLLTEPQPEVRASAVFALGALLDVGSDSSRDGVVDDDEKSRAETSIVGSLLSVVSDGSPLVRAEVAVALARFAFGHNKY 720
WD40-rpts
Query 721 LKSIAAAYWKPHCNSLLSSLPSLAHIRSSGTTYTNSNQHMPHASIVSSQIGPLLRFGNENSTLVREGRVSTSSPLANTGM 800
WD40-rpts
Query 801 MHGSPLSDDSSQHSDSGILHEDTVSNGAVNHSRPKPLNNALYSQCVLTMCTLANDPSPRIASLGRRVLSIIGIEQVVTKP 880
WD40-rpts
Query 881 VKPSSSSIKPSDGTAASQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEFRPQLMNSPDSGLA 960
WD40-rpts
Query 961 DPLWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTPADDGEEIFTRREEREKFVLERIAKCQHSPVSKLNDNPIASWD 1040
WD40-rpts (_________________WD 1________________)
Query 1041 TKFEMGTKTLLLQPFSPIVVAADENERIRVWNYEEPALLNSFDNHDFPDKGISKLCLVNELDDSLLLAASCDGSIRIWKD 1120
WD40-rpts (_____________WD 2_____________) (___________________WD 3___________________)
Query 1121 YTVKGKQKLVTAFSAIHGHKPGVRSINAVVDWQQQSGYLYASGEVSSIMLWDLDKEQLVKCIPSSSDCSISALSASQVHG 1200
WD40-rpts (___________________WD 4__________________) (__________________WD 5__
Query 1201 GQLAAGFLDGSVKLYDVRTPEMPVCTMRPHVQKVEKVVGIGFQPGLDSSKIVSASQAGDIQFLDIRNLRDRYLTIDAHRG 1280
WD40-rpts _______________)(_____________________WD 6_____________________) (___________
Query 1281 SLTALAVHRHAPILASGSAKQLIKVFSLDGDQLGTIRYHPTFMPQKIGSVSCLTFHPYEVLLAAGAVDACVSIYADGNSQ 1360
WD40-rpts ______WD 7________________) (____________________WD 8____________________)
Query 1361 GR 1362
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh03G003090 (Len=1362): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 10 1002-1040 6.18 370.08 0.00064 22.5% 51.62 WD 2: Seg 14 1041-1072 5.13 326.62 0.00247 20.0% 48.18 WD 3: Seg 17 1076-1119 6.05 364.67 0.00076 25.0% 48.48 WD 4: Seg 21 1130-1172 5.42 338.74 0.00169 27.5% 41.00 WD 5: Seg 24 1176-1216 6.01 363.13 0.00079 20.0% 57.79 WD 6: Seg 28 1217-1264 6.09 366.03 0.00073 27.5% 46.56 WD 7: Seg 31 1269-1307 6.93 400.80 0.00025 25.0% 55.67 WD 8: Seg 35 1310-1355 6.41 379.46 0.00048 25.0% 55.16Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1002-1040 -GE------EIFTRREERE-------KFVLE--R-----IAK--CQHS----PVSKLNDNPIASWD WD 2 1041-1072 TK--------------FEM-------GTKTL--L-----LQP--FSPI----VVAADENERIRVWN WD 3 1076-1119 -PA------LLNSFDNHDF-------PDKGI--SKLCLVNEL--DDSL----LLAASCDGSIRIWK WD 4 1130-1172 -VT------AFSAIHGHKP-------GVRSI--N-----AVV--DWQQQSGYLYASGEVSSIMLWD WD 5 1176-1216 -EQ------LVKCIPSSSD-------CSISALSA-----SQV--HGGQ----LAAGFLDGSVKLYD WD 6 1217-1264 VRTPEMPVCTMRPHVQKVE-------KVVGI--G-----FQPGLDSSK----IVSASQAGDIQFLD WD 7 1269-1307 -RD------RYLTIDAHRG-------SLTAL--A-----VHR--HAPI----LASGSAKQLIKVFS WD 8 1310-1355 -GD------QLGTIRYHPTFMPQKIGSVSCL--T-----FHP--YEVL----LAAGAVDACVSIYA WD40 Template TGE------CLRTLSGHTS-------GVTSV--S-----FSP--DGKR----LVSGSEDGTIKVWD |
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