Input parameters:

  Query = CsaV3_4G011930 (Len=434)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G011930, Len=434):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDGELVRMSLEKF 80  
WD40-rpts                                                                                      

Query       81 LLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCI 160 
WD40-rpts                           (________________WD 1________________)  (__________________

Query      161 VNPGEATNVTLATASKDRTIRLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240 
WD40-rpts      _WD 2__________________)            (_________________WD 3________________)     

Query      241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLFNHVCGKALNCLD 320 
WD40-rpts                            (________________WD 4________________)   (________________

Query      321 IGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDS 400 
WD40-rpts      _WD 5________________)      (_________________WD 6_________________)   (________

Query      401 HNDKVLSADWWKDDSIVSGGADSKLRISSGIYVL 434 
WD40-rpts      ________WD 7________________)     

7 WD40-repeats found in QUERY=CsaV3_4G011930 (Len=434):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   102-139      7.50  424.55  0.00012       27.5%     46.10
  WD 2:  Seg 10   142-184      8.70  474.14  2.5e-05       35.0%     55.43
  WD 3:  Seg 14   197-235      8.97  485.29  1.8e-05       37.5%     49.73
  WD 4:  Seg 18   263-300      7.22  412.76  0.00017       32.5%     52.59
  WD 5:  Seg 22   304-342      6.38  378.03  0.00050       22.5%     50.78
  WD 6:  Seg 26   349-388      7.97  443.91  6.5e-05       30.0%     56.80
  WD 7:  Seg 30   392-429      7.23  413.45  0.00017       22.5%     53.60

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  102-139    PRREEEPSVHDDWVSAVDGSCPG------FILTGCYDGFGRVWE
   WD 2  142-184    GLCTHILEGHSDAISSVCIVNPG-EATNVTLATASKDRTIRLWK
   WD 3  197-235    LRPFKILKGHRLSVQSVASQKSG-H----LICSGSWDHTIKLWR
   WD 4  263-300    EDSVATLDGHSQSVSSVAW-PKH-E----EIYSVSWDHSVRRWD
   WD 5  304-342    GNVLFNHVCGKA-LNCLDIGGEGSS----LIAAGGSDPTIRIWD
   WD 6  349-388    SSPIFQFSSHTSWVSDCKWHDKS-W---FHLLSASYDGKVMLWD
   WD 7  392-429    AWPLAVIDSHNDKVLSADWWKDD-S-----IVSGGADSKLRISS

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDG-K----RLVSGSEDGTIKVWD