WDRR: WD40 Repeat Recognition
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| JobID: 3EQBP1659460467 Submitted: 2022-08-03 01:14:27 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79788766 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh02G016250 (Len=453) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh02G016250, Len=453): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDAGSLSSSNANRSRCPLQEQHLHKKHNRENLDRFIPNRSAMDFDYAHYMVTEGRKGKENPTFSSPSKEAYQKRLAETLN 80
WD40-rpts (
Query 81 MNRTRILAFKNKPPAPVEMIPKEFFSSASHDKPVKARRQIPQTSERTLDAPDLVDDYYLNLLDWGSSNVLAIALSNTVYL 160
WD40-rpts _________________WD 1________________) (__________________WD 2________________
Query 161 WNANDGSTSELVTVDDEVGPVTSVNWAPDGRHIAIGLNNSEVQLWDSTANRQLRTLRGGHRMRVGSLAWNNHILTTGGMD 240
WD40-rpts _)(___________________WD 3___________________) (________________WD 4__________
Query 241 GRILNNDVRIRDHVVETYRGHDQEVCGLKWSLSGQQLASGGNDNVLQIWDRSMASSNSATQYLHRLEDHTSAVKALAWCP 320
WD40-rpts ______) (_________________WD 5________________) (________________
Query 321 FQGNLLASGGGAGDRSIKFWNTHTGTCLNSVDTGSQVCALLWNKNERELLSSHGFSQNQLTLWKYPSMVKMGELTGHTSR 400
WD40-rpts WD 6________________) (_________________WD 7_________________) (____________
Query 401 VLYMAQSPDGCTVASAAADETLRFWHAFGTPEVAKTAPKSSITEPFAHLNRIR 453
WD40-rpts _____WD 8________________)
 8 WD40-repeats found in QUERY=CmaCh02G016250 (Len=453): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 80-118 6.65 389.35 0.00035 20.0% 38.10 WD 2: Seg 5 122-162 5.09 325.04 0.00259 12.5% 53.59 WD 3: Seg 9 163-206 8.73 475.07 2.5e-05 30.0% 58.47 WD 4: Seg 13 210-247 5.24 331.14 0.00214 30.0% 51.14 WD 5: Seg 17 252-290 9.45 504.96 9.7e-06 30.0% 55.47 WD 6: Seg 21 304-341 6.24 372.24 0.00060 30.0% 37.81 WD 7: Seg 24 345-384 5.77 353.19 0.00108 17.5% 50.35 WD 8: Seg 28 388-426 9.44 504.49 9.9e-06 35.0% 57.67Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 80-118 NMN----RTRILAFKN--KPPAPVEMIPK-EFFS---S-ASHDKPVKARR WD 2 122-162 -QT----SERTLDAPDLVDDYYLNLLDWGSSNVL---A-IALSNTVYLWN WD 3 163-206 ANDGSTSELVTVDDEV--GPVTSVNWAPDGRHIA---I-GLNNSEVQLWD WD 4 210-247 -NR----QLRTLRGGH--R-MRVGSLAWNNHILT---T-GGMDGRILNND WD 5 252-290 -DH----VVETYRGHD--QEVCGLKWSLSGQQLA---S-GGNDNVLQIWD WD 6 304-341 ---------HRLEDHT--SAVKALAWCPFQGNLLASGG-GAGDRSIKFWN WD 7 345-384 -GT----CLNSVDTGS--QVCALLWNKNERELLS---SHGFSQNQLTLWK WD 8 388-426 -MV----KMGELTGHT--SRVLYMAQSPDGCTVA---S-AAADETLRFWH WD40 Template TGE----CLRTLSGHT--SGVTSVSFSPDGKRLV---S-GSEDGTIKVWD |
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