Input parameters:

  Query = CmaCh11G012010 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G012010, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDLNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMEFPSAIHVKRIARNPSEQTGESVLLLTGPQGRINRAVWGPLNKT 160 
WD40-rpts         (______________________WD 3_____________________)   (_________________WD 4___

Query      161 IISAGEDAVVRIWDSETGKLLKESDKETGHKKTITSLTKSSDGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVTM 240 
WD40-rpts      _____________)(____________________WD 5___________________)   (_________________

Query      241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKVLQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 
WD40-rpts      WD 6_________________)               (_________________WD 7________________)    

Query      321 YFNIKI 326 
WD40-rpts            

7 WD40-repeats found in QUERY=CmaCh11G012010 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.55  468.02  3.1e-05       25.0%     52.37
  WD 2:  Seg  5    42-80      10.39  543.94  2.9e-06       42.5%     56.73
  WD 3:  Seg  9    84-132      4.48  299.72  0.00568       20.0%     44.06
  WD 4:  Seg 13   136-174      9.81  519.81  6.1e-06       27.5%     58.99
  WD 5:  Seg 17   175-219      8.84  479.74  2.1e-05       30.0%     50.92
  WD 6:  Seg 21   223-262      5.72  350.75  0.00117       22.5%     47.35
  WD 7:  Seg 26   278-316      9.93  524.67  5.3e-06       32.5%     57.16

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MR-----PI--LMKGHERPLTFLKYNR--DGDLLFSCAK-----------DLNPTVWF
   WD 2   42-80     -G-----ERLGTYRGHNGAVWCCDVSR--DSMRLITGSA-----------DQTAKLWN
   WD 3   84-132    -G-----QQLFSF-NFDSPARAVDFSV--GDKLAVITTDPFMEFPSAIHVKRIARNPS
   WD 4  136-174    -G-----ESVLLLTGPQGRINRAVWGP--LNKTIISAGE-----------DAVVRIWD
   WD 5  175-219    SETGKLLKESDKETGHKKTITSLTKSS--DGSHFLTGSL-----------DKSARLWD
   WD 6  223-262    -L-----TLIKTYVTERP-VNAVTMSPLLDHVVLGGGQD-----------ASAVTTTD
   WD 7  278-316    -Q-----EEIGGVKGHFGPINALAFNP--DGKSFSSGGE-----------DGYVRLHH

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSP--DGKRLVSGSE-----------DGTIKVWD