WDRR: WD40 Repeat Recognition
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| JobID: 3DKWZ1659515042 Submitted: 2022-08-03 16:24:02 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734430 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G028460 (Len=646) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G028460, Len=646): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDEAEIYDGIRAQFPLTFGKQSKAQTPLEAIHNTTRRNTSVSIPEKSSSSQNDNALPSISSSSKDWLNSLRTSKTLNPP 80
WD40-rpts (________________WD 1________________) (______
Query 81 VMNDSGPSGITHDSDGPKIGPPRPPVESKLNEDDDDDAIIGPPPPPPAFEGSDDDGEMIGPPPPPPRSNLEDSDVEEEGY 160
WD40-rpts ___________WD 2________________) (______________________WD 3_____________
Query 161 EENRFRIPQSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQIRNLSWSPTADR 240
WD40-rpts ________)(________________WD 4________________) (________________WD 5__
Query 241 FLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVI 320
WD40-rpts _____________) (____________________WD 6___________________)
Query 321 KPKLARPGRIPVTTCAWDREGKSIAGGIGDGSIQIWNLKPGWGSRPDIHIENSHSDDITALKFSSDGKILLSRSFDGSLK 400
WD40-rpts (________________WD 7_______________) (_________________WD 8______________
Query 401 VWDLRQMKKPLKVFDNLPNNYAQTNIAFSPDEQLFLTGTSVEKDSQTGGLLCFYDRTKLELISRVGISPTSSVVQCAWHP 480
WD40-rpts __)(_______________________WD 9_______________________)(___________________WD10_
Query 481 KLNQIFATSGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSVDDFEAKPVIHNPHALPLFRDAPSRKRQREKILKDPLK 560
WD40-rpts _________________)___________WD11___________)
Query 561 SHKPELPINGPGFGGRVGTSQGSLLTQYLMKQGGLIKETWMEEDPREAILKYADVAANDPKYIAPAYSHTQPEPVFAKSD 640
WD40-rpts
Query 641 SEEEDK 646
WD40-rpts
 11 WD40-repeats found in QUERY=CsaV3_3G028460 (Len=646): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 33-70 5.61 346.46 0.00133 15.0% 18.60 WD 2: Seg 4 74-112 7.85 439.03 7.5e-05 15.0% 24.43 WD 3: Seg 8 121-169 4.94 318.88 0.00313 12.5% 25.01 WD 4: Seg 11 170-207 9.17 493.62 1.4e-05 35.0% 52.31 WD 5: Seg 15 218-254 6.52 383.79 0.00042 22.5% 53.46 WD 6: Seg 20 265-309 8.57 468.86 3.0e-05 37.5% 49.52 WD 7: Seg 25 321-357 7.77 435.76 8.3e-05 22.5% 45.05 WD 8: Seg 28 365-403 9.47 506.04 9.4e-06 40.0% 53.89 WD 9: Seg 32 404-455 5.16 327.74 0.00238 22.5% 45.30 WD10: Seg 36 456-498 5.95 360.54 0.00086 17.5% 49.93 WD11: Seg 39 497-525 3.91 276.16 0.01176 12.5% 29.04Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 33-70 ---H----NTTRRN-----TSVSIPEKSSSSQ--------NDN-ALPSISSS-------SKDWLNS WD 2 74-112 -S-K----TLNPPV-----MNDSGPSGITHDS--------DGP-KIGPPRPP-------VESKLNE WD 3 121-169 GPPP----PPPAFE-----GSDDDGEMIGPPPPPPRSNLEDSD-VEEEGYEE-------NRFRIPQ WD 4 170-207 SN-E----I--VLK-----GHTKVVSALAVDH--------TGS-RVLSGSYD-------YTVRMYD WD 5 218-254 -F-R----QLEPFE-----GHQ--IRNLSWSP--------TAD-RFLCVTGS-------AQAKIYD WD 6 265-309 KG-DMYIRDLKNTK-----GHISGLTCGEWHP--------KTKETILTSSED-------GSLRIWD WD 7 321-357 --------KPKLAR-----PGRIPVTTCAWDR--------EGK-SIAGGIGD-------GSIQIWN WD 8 365-403 -R-P----DIHIEN-----SHSDDITALKFSS--------DGK-ILLSRSFD-------GSLKVWD WD 9 404-455 LR-Q----MKKPLKVFDNLPNNYAQTNIAFSP--------DEQ-LFLTGTSVEKDSQTGGLLCFYD WD10 456-498 RT-K-LELISRVGI-----SPTSSVVQCAWHP--------KLN-QIFATSGD-------KSQGGTH WD11 497-525 ---------------------THVLYDPTLSE--------RGA-LVCVARAP-------RKKSVDD WD40 Template TG-E----CLRTLS-----GHTSGVTSVSFSP--------DGK-RLVSGSED-------GTIKVWD |
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