WDRR: WD40 Repeat Recognition
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| JobID: 39VGN1659504325 Submitted: 2022-08-03 13:25:25 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747187 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh17G003320 (Len=483) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh17G003320, Len=483): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPGPALEMEPVEPQSLKKLSFKSLKRALDLFSPVHGHVAPPDLESKKIRISHKISVEYGGLKNTGAKSTGQASSTPDSAL 80
WD40-rpts (_______________________
Query 81 ETSAPSNALALTGPGSSGDAKSVAQNALVIGPTVQPNAQNDGGLQGRSSAIISASGSSERMSTSAIMERIPSKWPRPVWH 160
WD40-rpts ___WD 1_________________________) (________________WD 2________________)
Query 161 APWRNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVK 240
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 241 CWDLEQNKVIRHYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHD 320
WD40-rpts __) (_________________WD 5________________) (_________________WD 6__________
Query 321 TTIKFWDLRYGKTMTTLTYHKKSVRAMALHPKENSFASASADNIKKFNLPRGEFMHNMLSQQKTIINAMAVNEEGVMATG 400
WD40-rpts ______) (________________WD 7________________) (_________________WD 8_______
Query 401 GDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLLTCEADKTIKMWKEDENATPETHPLNFKPPKDI 480
WD40-rpts _________) (_________________WD 9_________________)
Query 481 RRF 483
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh17G003320 (Len=483): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 57-113 3.24 248.61 0.02744 7.5% 29.13 WD 2: Seg 5 118-155 6.43 380.43 0.00046 20.0% 34.00 WD 3: Seg 8 163-201 9.98 526.84 4.9e-06 42.5% 56.05 WD 4: Seg 12 205-243 9.61 511.52 7.9e-06 30.0% 57.30 WD 5: Seg 16 247-285 9.82 520.17 6.1e-06 32.5% 57.94 WD 6: Seg 20 289-327 10.09 531.46 4.3e-06 42.5% 56.14 WD 7: Seg 24 331-368 7.71 432.97 9.1e-05 27.5% 56.12 WD 8: Seg 28 372-410 8.68 473.24 2.6e-05 15.0% 56.41 WD 9: Seg 33 421-460 9.36 501.14 1.1e-05 25.0% 41.46Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 57-113 EYGGLKNTGAKSTGQASSTPDSALETSAPSNALALTGPGSSGDAKSVAQNALVIGPT WD 2 118-155 -AQNDGGL-----------------QGRSSAIISASGSSER-MSTSAIMERIPSKWP WD 3 163-201 -WRNYRVI-----------------SGHLGWVRSVAFDPSNTWFCTGSADRTIKIWD WD 4 205-243 -GKLKLTL-----------------TGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWD WD 5 247-285 -NKVIRHY-----------------HGHLSGVYCLALHPTIDVLLTGGRDSVCRVWD WD 6 289-327 -KMQIHAL-----------------SGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWD WD 7 331-368 -GKTMTTL-----------------TYHKKSVRAMALHPKENSFASASAD-NIKKFN WD 8 372-410 -GEFMHNM-----------------LSQQKTIINAMAVNEEGVMATGGDNGSLWFWD WD 9 421-460 QTIVQPGS-----------------LDSEAGIYALSYDITGSRLLTCEADKTIKMWK WD40 Template TGECLRTL-----------------SGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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