WDRR: WD40 Repeat Recognition
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| JobID: 356NI1659514032 Submitted: 2022-08-03 16:07:12 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79733163 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G032930 (Len=830) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G032930, Len=830): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEFPECPVCLQTYDGESIVPRVLSCGHSACGTCLENLPQRFPETIRCPACNVLVKFPSQGASALPKNIDLLRLCPEPNAG 80
WD40-rpts
Query 81 ELVSKKSVKRSINQTHEFFPRLWSDEFYRAWKHWVLPHDAVSIERCDGVDGVEKLLLGRICPVSDSSFPITVGEDRTVSL 160
WD40-rpts
Query 161 VRIVSLPCSNNDCLFKFSYTSMVLKCLNELKDEEKNELGLILRAGFVNGGRVCRTFGLWGNLEDGFLYLVCERRNDNLLE 240
WD40-rpts
Query 241 MINNWIKKLDFRNKVCLNKDDLLSFAVIATELCDAIIAMHSLRLSTGFLSLSCFSLGVFGSVCVDINGVLVMGRTVCETV 320
WD40-rpts
Query 321 IEAVSSGSKLHMKELGMLTSNLIKKEAFVPPEVLLKLLNKEDVGLECSTTLCSVGNKCDIWSLVLVLLSLLLGKDCFEET 400
WD40-rpts
Query 401 LGSVEESHSDCSAFYGSWVEKVSSCLDTKFGLGYASLKQTLCRSLDFDPENRPHVVELLRCCRELIVSSELDALASLKLG 480
WD40-rpts (________________WD 1
Query 481 VNESGSESGDHCLVLGDLIRLPDKLIETHRDDMDQITEEKTTKKFVDGISVGMVKSRDMLGHRDSVTGLVIGGDYLFSSS 560
WD40-rpts ________________) (________________WD 2_______
Query 561 YDKTVQAWSLQDFSHVHTFIGHEHRIMDLVYIDEEQPLCVSADIGGGIYVWSVALPLKQDPLKKWYEEKDWRYDGIHALA 640
WD40-rpts ________) (_________________WD 3_________________)(_____________________WD 4__
Query 641 YSSNGYLYTGGGDKLVKEWSLKDGTLSGSMHGHKSVVSALVASNGVLYSGSWDGAIRLWSLANRSQLAVLGEESSGSLGS 720
WD40-rpts ___________________) (________________WD 5_______________) (________________
Query 721 VLRLAAKMNILVATHENGSIKVWRNDVFMKTMKLHDGAIFATSMLGKQLVTGGRDKAVNVQELFDNELEIDCRHLGSIPT 800
WD40-rpts __WD 6_________________)(________________WD 7________________)(_________________
Query 801 NSTITALLCWEDKLYVGYADRCIKVYYYGK 830
WD40-rpts ___WD 8___________________)
 8 WD40-repeats found in QUERY=CsaV3_1G032930 (Len=830): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 460-497 4.70 308.74 0.00429 20.0% 21.27 WD 2: Seg 19 533-569 7.29 415.61 0.00016 30.0% 49.53 WD 3: Seg 23 573-612 7.40 420.36 0.00013 25.0% 54.26 WD 4: Seg 27 613-660 6.05 364.50 0.00076 22.5% 45.12 WD 5: Seg 30 664-700 7.46 422.95 0.00012 35.0% 53.41 WD 6: Seg 34 704-744 7.07 406.89 0.00020 30.0% 54.94 WD 7: Seg 38 745-782 8.23 454.43 4.7e-05 25.0% 48.83 WD 8: Seg 42 783-827 6.60 387.12 0.00038 22.5% 48.30Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 460-497 --R-----CCR---------ELIVSSELD--ALASLKLGVNES-GSESGDHCLVLGD WD 2 533-569 MVK------SR---------DMLGHRDSV--TGLVIGGD--YL-FSSSYDKTVQAWS WD 3 573-612 -FS-----HVH---------TFIGHEHRI--MDLVYIDEEQPLCVSADIGGGIYVWS WD 4 613-660 VAL-----PLKQDPLKKWYEEKDWRYDGI--HALAYSSNG-YL-YTGGGDKLVKEWS WD 5 664-700 -GT-----LSG---------SMHGHKSVV--SALVAS--NGVL-YSGSWDGAIRLWS WD 6 704-744 -RS-----QLA---------VLGEESSGSLGSVLRLAAKMNIL-VATHENGSIKVWR WD 7 745-782 NDV-----FMK---------TMKLHDGAI----FATSMLGKQL-VTGGRDKAVNVQE WD 8 783-827 LFDNELEIDCR---------HLGSIPTNS--TITALLCWEDKL-YVGYADRCIKVYY WD40 Template TGE-----CLR---------TLSGHTSGV--TSVSFSPDGKRL-VSGSEDGTIKVWD |
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