Input parameters:

  Query = CsaV3_5G039540 (Len=505)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G039540, Len=505):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKKKTSAPPNGAKKGKNFPLSKDPFFSSESRKRRKIVDDEIESGESDEDNGLMGVEDEEFEEETVDEKRKRVAVEYLEK 80  
WD40-rpts                                                                                      

Query       81 IREIAKREKERGDEEKDEDESDDEGEKDSLVAKILQQEQLEDSGRLRREIASRVQKPVARDEFQLLIKHRQSVTAVALSE 160 
WD40-rpts                                                (_________________________WD 1________

Query      161 DDLKGFSSSKDGTILHWDVESGKGEKYRWPSDEVLRLHGAKDPQGRATKHSKVTFSLAVSSDGRYLASGGLDRHVHIWDT 240 
WD40-rpts      _________________)                   (__________________WD 2__________________) 

Query      241 RTREHIQAFPGHRGPVSCLTFRQGTSELFSGSYDRTVKIWNVDDRAYINTLFGHQSDVLTIDCLRKERLLTVGRDRSMQL 320 
WD40-rpts        (_________________WD 3________________)   (________________WD 4_______________

Query      321 WKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWTALKKKPVFIVRNAHSSSSSSTNLELKENGAIPNGCMGN 400 
WD40-rpts      _)(_________________WD 5_________________)(_________________WD 6________________

Query      401 GDANHNTSHNLSAYSWISSVSVCRNSDLAASGAGNGSVRLWALTSDKKDVRPLYDLPLVGFVNSLTFANSGRFVVAGVGQ 480 
WD40-rpts      )   (________________WD 7________________)(____________________WD 8_____________

Query      481 EPRLGRWGRIPAARNGVAVHPLKLS 505 
WD40-rpts      _______)                 

8 WD40-repeats found in QUERY=CsaV3_5G039540 (Len=505):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   123-178      8.95  484.37  1.8e-05       40.0%     54.69
  WD 2:  Seg  8   198-239      9.15  492.54  1.4e-05       30.0%     47.22
  WD 3:  Seg 11   243-281     10.05  529.77  4.5e-06       32.5%     55.83
  WD 4:  Seg 15   285-322      7.72  433.46  9.0e-05       25.0%     52.48
  WD 5:  Seg 19   323-362      7.17  410.76  0.00018       27.5%     50.01
  WD 6:  Seg 23   363-401      3.90  275.92  0.01185       10.0%     24.30
  WD 7:  Seg 25   405-442      7.08  406.93  0.00020       25.0%     50.52
  WD 8:  Seg 29   443-488      5.95  360.29  0.00087       17.5%     45.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  123-178    SGRLRREIASRVQKPVARD---EFQ-LLI-----KHRQSVTAVALSEDDLKGFSS-SKDGTILHWD
   WD 2  198-239    HG--------------AKD---PQG-RAT-----KHSKVTFSLAVSSDGRYLASG-GLDRHVHIWD
   WD 3  243-281    -R----------------E---HIQ-AFP-----GHRGPVSCLTFRQGTSELFSG-SYDRTVKIWN
   WD 4  285-322    -R----------------A---YIN-TLF-----GHQSDVLTIDCLRKE-RLLTV-GRDRSMQLWK
   WD 5  323-362    VP----------------E---ESRLVFR-----APASSLECCCFISNDE-FLSG-SDDGSIELWT
   WD 6  363-401    AL----------------KKKPVFI-VRN-----AHSSSSSSTNLELK----ENG-AIPNGCMGNG
   WD 7  405-442    -H----------------N---TSH-NLS-----AY-SWISSVSVCRNSDLAASG-AGNGSVRLWA
   WD 8  443-488    LT----------------S---DKK-DVRPLYDLPLVGFVNSLTFANSGRFVVAGVGQEPRLGRWG

   WD40 Template    TG----------------E---CLR-TLS-----GHTSGVTSVSFSPDGKRLVSG-SEDGTIKVWD