WDRR: WD40 Repeat Recognition
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| JobID: 32VZE1659502375 Submitted: 2022-08-03 12:52:55 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79750100 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G013170 (Len=978) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G013170, Len=978): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSTANYRSPWFSYFRSGISSQTNTQGSNPIPFHFSPPLPERIVWIVTVVVRISLRASSERKMPLRLAIKRKLAQRSERVK 80
WD40-rpts (____________________W
Query 81 SVDLHPSEPWILASLYSGTVCIWNYQSQTMVKSFEVTELPVRSAKFIARKQWVVTGADDMFIRVYNYNTMDKIKVFEAHT 160
WD40-rpts D 1____________________) (_________________WD 2________________) (__________
Query 161 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 240
WD40-rpts _______WD 3________________)(___________________WD 4___________________)(_______
Query 241 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRIWHST 320
WD40-rpts ____________WD 5___________________) (_________________WD 6________________)
Query 321 TYRLENTLNYGLERVWAIGYMKSSRRVVIGYDEGTIMVKLGRDEPFASMDNSGKIIWAKHNEIQTVNIKSVGANFEVTDG 400
WD40-rpts (_________________WD 7________________)
Query 401 ERLPLAVKEMGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSADGEYAVRESTSKIKIFSKNF 480
WD40-rpts (_________________WD 8_________________)
Query 481 QEKKSIRPTFSAEHIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVAIASDASFYILKYNRDAVSSY 560
WD40-rpts (______
Query 561 LDSGRPVDEQGVEDAFELLHEVNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLAGQSRVYLIDK 640
WD40-rpts ___________WD 9________________)
Query 641 EFNVVGYTLLLSLIEYKTLVMRGDYERANEVLPSIPKEHCNSVARFLEARGMIEEALEVATDLDYRFDLAIQLGRLEIAK 720
WD40-rpts
Query 721 DIAVEVQSESKWKQLGELAMSTGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLATDQGKNNVAFLCLFMLGRL 800
WD40-rpts
Query 801 EDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFDDWQVALSVESKAAQDRGVF 880
WD40-rpts
Query 881 TPAKTYGNLADKPYTTLVEAFRSKQIEGHLENGDIDHEGTEQNGGEEQDSHIAEHNDDESQEEGEGIVVDADSTDGAVLV 960
WD40-rpts
Query 961 NGSEADEEWGTNATTPSA 978
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh14G013170 (Len=978): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 59-104 5.90 358.20 0.00093 22.5% 51.23 WD 2: Seg 8 108-146 6.79 395.02 0.00030 20.0% 56.35 WD 3: Seg 12 150-188 8.14 450.76 5.2e-05 27.5% 56.82 WD 4: Seg 16 189-232 7.75 434.98 8.5e-05 37.5% 55.72 WD 5: Seg 20 233-276 7.98 444.21 6.4e-05 42.5% 51.44 WD 6: Seg 24 280-318 10.00 527.62 4.8e-06 45.0% 55.61 WD 7: Seg 28 322-360 5.27 332.16 0.00208 25.0% 56.29 WD 8: Seg 36 402-441 3.36 253.25 0.02380 15.0% 48.08 WD 9: Seg 49 554-592 3.46 257.42 0.02095 10.0% 25.95Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 59-104 ER--KMPLRLAIKRKLAQRSERVKSVDLHP-SEPW--ILASLYSGTVCIWN WD 2 108-146 -Q--T------MVKSFEVTELPVRSAKFIA-RKQW--VVTGADDMFIRVYN WD 3 150-188 -M--D------KIKVFEAHTDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD WD 4 189-232 WD--K---GWMCTQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN WD 5 233-276 LGSPD------PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD WD 6 280-318 -K--S------CVQTLEGHTHNVSAVCFHP-DLPI--IITGSEDGTVRIWH WD 7 322-360 -Y--R------LENTLNYGLERVWAIGYMK-SSRR--VVIGYDEGTIMVKL WD 8 402-441 RL--P-----LAVKEMGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT WD 9 554-592 -R--D------AVSSYLDSGRPVDEQGVED-AFEL--LHEVNERVRTGLWV WD40 Template TG--E------CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD |
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