WDRR: WD40 Repeat Recognition
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JobID: 2YFML1352449666    Submitted: 2012-11-09 16:27:46

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Job status:  [Done] Total run time: 386802923 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = PF3D7_1218900 (Len=717)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (PF3D7_1218900, Len=717):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKEFVEYNKKYFRNIQFVYDFLDKIGMKNSLNELKKESKIDYIKDYDLYFLDRNNQDISDDENIRDEEEKDEAENIDED 80  
WD40-rpts                                                                                      

Query       81 FEDIDKTFFIYTMNKMNNSILCKAIDLFDRDIKEKYVLLQNVQNVKNINHKGRDIDENRNNILYDDNDDDNINNNNNNNN 160 
WD40-rpts                                                                                      

Query      161 DDAVNTFDGYMYRPDQNNSLTIPFMKEKKENIFLKNDNKDDESLKLYNTNNVTHKVRMNSYNWDSYFTQDKEIYKKLNVS 240 
WD40-rpts                                                                                      

Query      241 IVHNDISNNINEQTNKPSNILCIQYIDIYHKQNNKYINSENIIFFQRFFPLFLLVGYANGNIILFLILYEKENKEKEQNE 320 
WD40-rpts                                                                                      

Query      321 KNGKKNEKNEISEKNEKNEKNEKNEKNEKNEKNEINKKDECHNDNHIYLYQQLEHISLGSPVMHIDINYQDNLFIASTMN 400 
WD40-rpts                                                                                      

Query      401 GDICICQINMKEIEDIKNKLIETNDLNHDTKIKNDNPYMFLKDVLKYHMKYSIQCLFNEDYSLFCSIANDKNLIIYEKIV 480 
WD40-rpts                                                                                      

Query      481 ANNKRNEKIDDICSNNINNNIYDDKPNYTYEKKKIIGLPDTPTNMLWVKHNNKEIIIISMLNSNHIIFLNSSNYLIENKL 560 
WD40-rpts                                                                                      

Query      561 YLFDLSKENNNEHEESKNEKHNILALHYHKKKNILVICTDTSKIFVYSFKEESIIKTIYGCVLNSLSFPTIQINISGNFI 640 
WD40-rpts                                                                                      

Query      641 YVTSEDKVHGTYILIFDIKSGNIINTINNGFKIRCFQLLKNYICPSTFNVNSNNIDTNKKTLLILGSFDKKLHFYSN 717 
WD40-rpts                                                                                   



No WD40-repeats found in QUERY=PF3D7_1218900 (Len=717)!

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Last modified: 09 Jan 2019