Input parameters:

  Query = CmaCh06G012170 (Len=944)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh06G012170, Len=944):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIPITSPVERCCEIFYWTRSQIRPLATAAAAMWRNSRSFSSKLRSSSSSSNPSTTTSIFTFYHPIGVAQPCLRALYPYTS 80  
WD40-rpts                                                                                      

Query       81 SLFSSLSPSPSSSDPIRLGFLNSHGVRGFSSVADPSSLASSSVVSRAREAVDLSRHYGRCYWEISKARLSMLVVATSGTG 160 
WD40-rpts                                                                                      

Query      161 FVLGSGSTVDLGGLCWTCAGTMMVAASANSLNQVFEIKNDAKMKRTHRRPLPSGRITILHAATWATSVGLIGTAMLATKA 240 
WD40-rpts                                                                                      

Query      241 NILAAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWAAASGQISLNAMILPAALYFWQIPHFMALAYLCRD 320 
WD40-rpts                                                                                      

Query      321 DYAAGGYKMYSLADATGQRTAAVALRNCLYLIPLGYLAYDWGITSGWFCLESSILTLAITATAFSFYRHCTMQKARRMFH 400 
WD40-rpts                                                                                      

Query      401 ASLLYLPVFMSGLLFHRLSDNKQTMKEDGAKRMLDNLVQEDRYNAEKIKIEHSRGVAQGRRPPVAYASVAPFPFLPVPVY 480 
WD40-rpts                                                                                      

Query      481 AEITQRHSTVTVLEYAVSLDFASHSQIRLPNSPNSASSKATMGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHA 560 
WD40-rpts                                                                                      

Query      561 LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDSENDARHYDDDRADAGGFGCANGKVQII 640 
WD40-rpts                                                                                      

Query      641 QQINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPSKPPLDGTCNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSD 720 
WD40-rpts                                                          (_______________WD 1________

Query      721 DAQICLWDINATPKNKTLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPTVNKPVQSVVAHQSEVNCL 800 
WD40-rpts      _______)         (_________________WD 2_________________)      (________________

Query      801 AFNPFNEWVVATGSTDKTVKLFDLRKISSALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 880 
WD40-rpts      _WD 3_________________)    (_________________WD 4_________________)(____________

Query      881 EDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPEEPPKAS 944 
WD40-rpts      ______________WD 5_________________________)                    

5 WD40-repeats found in QUERY=CmaCh06G012170 (Len=944):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   693-728      5.33  335.02  0.00190       32.5%     48.90
  WD 2:  Seg 17   738-777      4.36  294.75  0.00662       22.5%     49.39
  WD 3:  Seg 21   784-823      6.15  368.73  0.00067       27.5%     51.06
  WD 4:  Seg 24   828-867      5.94  360.10  0.00087       27.5%     47.40
  WD 5:  Seg 28   868-924      4.51  301.17  0.00543       30.0%     52.57

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  693-728    ---------------------LRLRGHNTEGYGLSWSK-FKQGH-L-LSGSDDAQICLWD
   WD 2  738-777    -L----------------EAMQIFKVHEGVVEDVAWHL-RHE-Y-LFGSVGDDQYLLIWD
   WD 3  784-823    -N----------------KPVQSVVAHQSEVNCLAFNP-FNEWV-V-ATGSTDKTVKLFD
   WD 4  828-867    -S----------------SALHTFDCHKEEVFQVGWNP-KNE-TIL-ASCCLGRRLMVWD
   WD 5  868-924    LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-V-V-ASVAEDNILQIWQ

   WD40 Template    TG----------------ECLRTLSGHTSGVTSVSFSP-DGK-R-L-VSGSEDGTIKVWD