WDRR: WD40 Repeat Recognition
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| JobID: 2UT5N1659462070 Submitted: 2022-08-03 01:41:10 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79756038 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh06G012470 (Len=781) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh06G012470, Len=781): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMNEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIE 80
WD40-rpts
Query 81 AQQIKSKEQQLQIQQLQLMRQAQLQRRDGAHPSLSGSLNAVNSEGMLVQPTATALAARMYEERMKNPNAMDSETSQPLLD 160
WD40-rpts
Query 161 ARVALMKPSTNHPGQLGNSGSVNAALQQMQARAQQPTDIKQEVNIGGTQRSLPMDPSSVYGPGLMQSKPGMGNTGLNPGL 240
WD40-rpts
Query 241 NGLPLKGWPLAGIEQMRPGLGAQVQKPFLQSTNQFQLLPQQQQQQQLLAQVQAQGNLGSSPMYSDMDPQRFRGLQRNNLN 320
WD40-rpts
Query 321 TKDGQPIANDGSIGSPMQSTSSKMNIPQMQQSSSQQQDGLHPQQVQQNRKRKGPSSSGAANSTGTGNTLGPNSQPSTPST 400
WD40-rpts (_______________WD 1______________
Query 401 HTPGDGAVIAPNMQNVNSMQKGGLIMYGNDGPGGLASSTNQLEDMEHLGDIGSLDDNVESFLSHDDGDGRDLFGTLKRNP 480
WD40-rpts _) (_________________WD 2________________)(____________________WD 3___________
Query 481 SDHAAENSKGPSFSEVGSMRKSNSKVVCCHFSSDGKLLASAGHDKRVVIWNMETLQTETTSEEHTLIITDVRFRPNSTQL 560
WD40-rpts ________) (_________________WD 4________________) (_________________WD 5____
Query 561 ATSSFDTTIRLWDSAQPTYSLHAYTGHNAQVASLDFHPKKNEIFCSCDANNEIRYWHINQGSTHVSKGGSASTQVRFQPR 640
WD40-rpts ____________)(___________________WD 6___________________)(_________________WD 7_
Query 641 IGQLLAAASDSVVSIIDFESDRPTLSLKGHSSEVHSVCWDTNGDYLASVSRDSVRVWSIASGECIHELSSSGNMFNSCVF 720
WD40-rpts ________________) (________________WD 8________________) (_________________W
Query 721 HPSYSSLLVLGGYQSLELWNMAENKCMTMPAHECVISSLAQSPITGMVASASHDKSVKIWK 781
WD40-rpts D 9________________)(__________________WD10_________________)
 10 WD40-repeats found in QUERY=CmaCh06G012470 (Len=781): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 367-402 5.94 359.85 0.00088 12.5% 18.51 WD 2: Seg 4 406-444 7.51 424.98 0.00012 12.5% 31.47 WD 3: Seg 7 445-489 4.40 296.25 0.00632 20.0% 32.70 WD 4: Seg 10 493-531 8.62 470.62 2.8e-05 27.5% 56.30 WD 5: Seg 14 535-573 9.62 511.96 7.8e-06 35.0% 57.05 WD 6: Seg 18 574-617 7.50 424.65 0.00012 25.0% 50.97 WD 7: Seg 22 618-657 7.84 438.64 7.6e-05 22.5% 53.53 WD 8: Seg 26 661-698 8.15 451.13 5.2e-05 35.0% 53.34 WD 9: Seg 30 702-740 8.64 471.48 2.7e-05 25.0% 57.35 WD10: Seg 34 741-781 8.52 466.51 3.2e-05 27.5% 51.44Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 367-402 QN-------RKRKGPSSSGAANSTGTG------NTL-GPNSQPSTPSTHT WD 2 406-444 -GA---VIAPNMQNVNSMQKGGLIMYG------NDG-PGGLASSTNQLED WD 3 445-489 -ME---HLGDIGSLDDNVESFLSHDDGDGRDLFGTL-KRNPSDHAAENSK WD 4 493-531 -FS---EVGSMRKSNSKVVCCHFSSDG------KLL-ASAGHDKRVVIWN WD 5 535-573 -LQ---TETTSEEHTLIITDVRFRPNS------TQL-ATSSFDTTIRLWD WD 6 574-617 SAQPTYSLHAYTGHNAQVASLDFHPKK------NEIFCSCDANNEIRYWH WD 7 618-657 INQ---GSTHVSKGGSASTQVRFQPRI------GQL-LAAASDSVVSIID WD 8 661-698 -DR---PTLSLKGHSSEVHSVCWDTNG------DYL-ASVSRD-SVRVWS WD 9 702-740 -GE---CIHELSSSGNMFNSCVFHPSY------SSL-LVLGGYQSLELWN WD10 741-781 MAE--NKCMTMPAHECVISSLAQSPIT------GMV-ASASHDKSVKIWK WD40 Template TGE---CLRTLSGHTSGVTSVSFSPDG------KRL-VSGSEDGTIKVWD |
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