Input parameters:

  Query = sp_Q9DC22_DCAF6_MOUSE (Len=876)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q9DC22_DCAF6_MOUSE, Len=876):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARSGSCPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80  
WD40-rpts                                              (_________________WD 1________________) 

Query       81 YSRKVLTTIRSGHRANIFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160 
WD40-rpts        (__________________WD 2__________________)(____________________WD 3___________

Query      161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPVPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240 
WD40-rpts      _________)          (_________________WD 4_________________)                    

Query      241 VARFIPSHLSNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320 
WD40-rpts          (________________WD 5_______________)                     (_________________

Query      321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRPRPRGGTNQPDVSTLPTVPSSPNLEVCETAMD 400 
WD40-rpts      _WD 6_________________)                       (_________________WD 7____________

Query      401 VDMPAALLQPSTSSTDPVQAQAATAAIESPRSSSLLSCPDSEPRQSVEASGHHAHHQSDNSNERLSPKPGTGEPVLSLHY 480 
WD40-rpts      ____)    (_________________WD 8________________)             (_________________W

Query      481 STEGTTTSTIKLNFTDEWSSTASSSRGNGSHCKSEGQEECLVPPSSVQPPEGDSETRAPEELSEKGTLPENLTQNQIDTA 560 
WD40-rpts      D 9________________)                                                            

Query      561 QLDNFPAEPLDSNSGEKNNPSQDSPCGLPEEGTLSETDRETCEQASTESATRHASTKPELPSQTEAIEQASTESATRHTS 640 
WD40-rpts                                                                                      

Query      641 ANPELPSQTEAIAPLAHEDPSARDSALQDTDDSDDDPVLIPGARYRTGPGDRRSAVARIQEFFRRRKERKEMEELDTLNI 720 
WD40-rpts        (_________________WD10_________________)________________WD11________________) 

Query      721 RRPLVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYD 800 
WD40-rpts        (__________________WD12_________________)   (_________________WD13____________

Query      801 IKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE 876 
WD40-rpts      ____)                                                                       

13 WD40-repeats found in QUERY=sp_Q9DC22_DCAF6_MOUSE (Len=876):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    41-79       9.08  489.63  1.6e-05       22.5%     53.28
  WD 2:  Seg  6    83-124      7.06  406.14  0.00021       40.0%     55.37
  WD 3:  Seg 10   125-170      6.27  373.49  0.00058       25.0%     50.34
  WD 4:  Seg 14   181-220      6.37  377.87  0.00050       22.5%     48.64
  WD 5:  Seg 19   245-281      8.15  451.43  5.1e-05       25.0%     44.62
  WD 6:  Seg 24   303-343      5.40  337.84  0.00174       12.5%     13.68
  WD 7:  Seg 29   367-405      6.44  380.49  0.00046       10.0%     11.09
  WD 8:  Seg 31   410-448      4.25  290.25  0.00761       15.0%      8.02
  WD 9:  Seg 32   462-500      4.94  318.69  0.00315       20.0%     26.14
  WD10:  Seg 34   643-682      2.86  232.68  0.04460       10.0%     -4.30
  WD11:  Seg 35   681-719      3.16  245.05  0.03060       15.0%      9.41
  WD12:  Seg 36   723-763      5.32  334.54  0.00193       25.0%     47.81
  WD13:  Seg 40   767-805      8.49  465.46  3.3e-05       27.5%     53.96

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-79     -LKLEAT-----L-NVHDG-CVNTICWN--D--T-GEYILSGSDDTKLVISN
   WD 2   83-124    -RKVLTT-----IRSGHRA-NIFSAKFL--PCTD-DKQIVSCSGDGVIFYTN
   WD 3  125-170    IEQDAETNRQCQF-TCHYG-TTYEIMTV--P-ND-PYTFLSCGEDGTVRWFD
   WD 4  181-220    -DCKDDI-----L-INCRR-AATSVAIC--P--PVPYYLAVGCSDSSVRIYD
   WD 5  245-281    ---IPSH-----L-SNKSC-RVTSLCYS--E--D-GQEILVSYSSDYIYLFD
   WD 6  303-343    RQPPVKR-----L-RLRGDWSDTGPRAR--P--E-SERERDGEQSPNVSLMQ
   WD 7  367-405    -GRPRPR-----G-GTNQP-DVSTLPTV--P--S-SPNLEVCETAMDVDMPA
   WD 8  410-448    -PSTSST-----D-PVQAQ-AATAAIES--P--R-SSSLLSCPDSEPRQSVE
   WD 9  462-500    -NERLSP-----K-PGTGE-PVLSLHYS--T--E-GTTTSTIKLNFTDEWSS
   WD10  643-682    -PELPSQ-----T-EAIAP-LAHEDPSA--R--DSALQDTDDSDDDPVLIPG
   WD11  681-719    PGARYRT-----G-PGDRR-S-AVARIQ--E--F-FRRRKERKEMEELDTLN
   WD12  723-763    -PLVKMV-----Y-KGHRN-SRTMIKEANFW--G-ANFVMSGSDCGHIFIWD
   WD13  767-805    -AEHLML-----L-EADNH-VVNCLQPH--P--F-DPILASSGIDYDIKIWS

   WD40 Template    TGECLRT-----L-SGHTS-GVTSVSFS--P--D-GKRLVSGSEDGTIKVWD