WDRR: WD40 Repeat Recognition
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| JobID: 2PPBJ1659462341 Submitted: 2022-08-03 01:45:41 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79754491 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh08G010460 (Len=774) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh08G010460, Len=774): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTASFGVFDESNSPSTSTPPLPPHVSQPGPAYPLSRQRVGNVFQLLAQREVSPQTKRSLRRFWGDSHDSQRDPAGPRCEA 80
WD40-rpts (________________WD 1________________) (______________WD 2____
Query 81 ARDAKRGLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGTCLKVLSGHRRTPWVVR 160
WD40-rpts __________) (_________________WD 3________________) (_________________
Query 161 FHPLYPEIVASGSLDYDVRLWDANTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYNKKGETPSPTIVLRTRR 240
WD40-rpts WD 4_________________) (________________WD 5_______________) (___________
Query 241 SLRAVHFHPHAAQFLLTAEVNDLDSSESAITLATSPGYVQYPPPTVYFADAHSSDRSSLVDGLPLMSFPLLIWPSFSKEN 320
WD40-rpts ___WD 6______________) (_______________WD 7_______________) (___
Query 321 RRMSMQRMEADHAVGRLQRVDPSASVRLLTYSTPSGQYELVLSPIEPNSSSPVPEETGTNPYTSEMETEVSETAVDASEH 400
WD40-rpts ___________WD 8______________) (_________________WD 9________________)
Query 401 MEVQTEVRNNQNFPFNDPWELPFLQGWLIGQSQANQHALRSHSDDVRENSSAPSDIGGIHAPLASLVPTSTGQSRGGRRS 480
WD40-rpts (_________________WD10________________)
Query 481 SSRNRSLRSRVPMPVSGLDEDATMSNSIPDESDPQPIVSRIQSELAASLAAAAAAELPCTVKLRIWSHDVKNPCAPLNDE 560
WD40-rpts
Query 561 RCRLAIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGFQSYANSDATGAATSPTRHPISAQQVMYELRIYSLEEA 640
WD40-rpts (________________WD11_______________)
Query 641 TFGMVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHSSLLKSVVVDGETTVPIYTILEVYRVSNMELVRVLPSAEDEVN 720
WD40-rpts (______________
Query 721 VACFHPSVGGGVVYGTKEGKLRILQYDSSQAINHSMYGFLDENMLEVPTYALEC 774
WD40-rpts ___WD12_________________)
 12 WD40-repeats found in QUERY=CmaCh08G010460 (Len=774): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 7-44 5.31 334.15 0.00195 12.5% -2.08 WD 2: Seg 3 58-91 4.97 320.13 0.00302 10.0% 46.35 WD 3: Seg 6 101-139 8.36 459.97 3.9e-05 30.0% 50.28 WD 4: Seg 10 143-182 8.80 478.36 2.2e-05 40.0% 53.88 WD 5: Seg 14 186-222 6.12 367.49 0.00069 20.0% 54.97 WD 6: Seg 18 229-262 3.89 275.27 0.01209 15.0% 36.85 WD 7: Seg 21 266-301 5.79 353.97 0.00106 15.0% 45.48 WD 8: Seg 26 317-350 4.95 319.17 0.00311 5.0% 22.76 WD 9: Seg 29 356-394 6.58 386.32 0.00039 12.5% 8.71 WD10: Seg 32 433-471 4.50 300.47 0.00555 12.5% 3.98 WD11: Seg 38 600-636 5.91 358.60 0.00091 12.5% -2.22 WD12: Seg 43 706-745 7.57 427.25 0.00011 25.0% 45.68Multiple sequence alignment of 12 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 7-44 VFD--ESNSPSTSTPPLPPHVS-Q-PGPAYPLSRQRVGNVFQ WD 2 58-91 ------SLRRFWGDSHDSQRDP-A-GPRCEAARDAKRGLISW WD 3 101-139 -SAKYCPLLPPPRSTIAAAFSP-D-GRTLASTHGDHTVKIID WD 4 143-182 -GTCLKVLSGHRRTPWVVRFHPLY-PEIVASGSLDYDVRLWD WD 5 186-222 -AECIGSRDFYRP-IASIAFHA-Q-GELLAVAS-GHKLYIWH WD 6 229-262 -TPSPTIVLRTRRSLRAVHFHP-H-AAQFLL-----TAEVND WD 7 266-301 -SESAITLATSPG---YVQYPP-P-TVYFADAHSSDRSSLVD WD 8 317-350 ------SKENRRMSMQRMEADH-A-VGRLQRVDPSASVRLLT WD 9 356-394 -GQYELVLSPIEPNSSSPVPEE-T-GTNPYTSEMETEVSETA WD10 433-471 -QANQHALRSHSDDVRENSSAP-S-DIGGIHAPLASLVPTST WD11 600-636 ---DPGFQSYANSDATGAATSP-T-RHPISAQQVMYELRIYS WD12 706-745 -MELVRVLPSAEDEVNVACFHP-SVGGGVVYGTKEGKLRILQ WD40 Template TGECLRTLSGHTSGVTSVSFSP-D-GKRLVSGSEDGTIKVWD |
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