WDRR: WD40 Repeat Recognition
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| JobID: 2OLXU1659503521 Submitted: 2022-08-03 13:12:01 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747411 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G012690 (Len=1061) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G012690, Len=1061): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEMSEEMTLLDAAEDAHVQNKVRQDAQENEFSLKPENTNVVESKEMLIPIDGGYSQDYPHEFTEILEGKNLSRCKNTVK 80
WD40-rpts
Query 81 LSDQPECSPCCMDDAGVMVEELTVKNHNGSNLAIIGPSNNRARLLSRHNQWQHLYQLASGSGSGSSRMDTSYKNNGQTVT 160
WD40-rpts
Query 161 PGIETGGYTSFPEAFAGRANHNDCGEKLEETKAIDNKSGDAHGSIRTKILSKSGFPEFFVKNTLKGKGIICRGIPLEGFN 240
WD40-rpts
Query 241 VEHRNPKNARNAGGITLASDSSLQHDVKPVIPSLNRKSERKFRGSALDGISLRDWLKVPHHKVNKSECLFIFKHVVELVD 320
WD40-rpts
Query 321 RYHARGVLLHDLRPCSFRILTTNEIRYFGTFIQLKTAESLMVKDSQCSDSHQMQKRPLEQGNFLSFGVSPKKQKDVQNMS 400
WD40-rpts
Query 401 LMAQHPHFSLESGVNLETANTRVCNKNASENYNEHFAEQGVRSKPAGPCAYDSSLTPISGLLEEKWYASPEELNAGCCSP 480
WD40-rpts
Query 481 KSNIFSLGVLLFELLGKFESDGALVAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILESELINGIANV 560
WD40-rpts
Query 561 PAAELSTSIDEEDAESELLLQFLTSLNEQKRKHASKLMEDMRYLESDIEEVNKRHSSAKALDKSSLSNTMNGRDSSIYHG 640
WD40-rpts
Query 641 GCLNSDGFSQVYTISHINEERIVKNISQLESAYFSMRSKVDPSKNDPAIRTDKDLLRARENCYLLQKDDERSHGDRLGAF 720
WD40-rpts (_________________WD 1_
Query 721 FDGFCKYSRYSKFKVCGVLRNGDFNSSSNVICSLSFDRDEDYFSAAGVSKKIRIFEFNSLFSDSVDIHYPAVEMCNRSKL 800
WD40-rpts ________________) (________________WD 2_______________) (_____________
Query 801 SCVCWNSYIRNYLASTDYDGVVKLWDATVGQEVSQFKEHEKRAWSVDFSQVHPTKLASGSDDCTVKLWSINEKKCLGTIR 880
WD40-rpts ____WD 3_________________) (_________________WD 4_________________) (_______
Query 881 NIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSETLVSASTDNTLKLWDLNRTNPT 960
WD40-rpts __________WD 5________________) (________________WD 6________________)
Query 961 GLSTNPCSLTLSGHTNEKNFVGLSVFDGYIACGSETNEVYAYHRSLPMPMTSYKFGSVDPISGKETEDDNGQFVSSVCWR 1040
WD40-rpts (_________________WD 7________________) (_________________WD
Query 1041 GKSDMVVAANSSGCIKVLQMV 1061
WD40-rpts 8________________)
 8 WD40-repeats found in QUERY=CmaCh15G012690 (Len=1061): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 10 698-737 6.20 370.66 0.00063 12.5% 39.74 WD 2: Seg 14 740-776 7.16 410.59 0.00018 12.5% 48.45 WD 3: Seg 17 787-826 5.96 360.97 0.00085 22.5% 47.20 WD 4: Seg 21 830-869 8.27 456.23 4.4e-05 35.0% 55.64 WD 5: Seg 25 873-911 5.77 352.93 0.00109 30.0% 53.69 WD 6: Seg 28 916-953 7.53 425.63 0.00011 40.0% 48.23 WD 7: Seg 32 965-1003 7.71 432.97 9.1e-05 30.0% 55.12 WD 8: Seg 36 1021-1059 5.80 354.42 0.00104 22.5% 47.91Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 698-737 ARENCYLLQKDDERSHGDRLGA-FFDG-FCKYSRYSKFKVCG WD 2 740-776 RN---GDFNSSSNVICSLSFDR-DEDY-FSAAGVSKKIRIFE WD 3 787-826 -IHYPAVEMCNRSKLSCVCWNSYIRNY-LASTDYDGVVKLWD WD 4 830-869 -GQEVSQFKEHEKRAWSVDFSQVHPTK-LASGSDDCTVKLWS WD 5 873-911 -KKCLGTIRNIAN-VCCVQFSA-HSTHLLAFGSADYRTYCFD WD 6 916-953 -KAPWCVLGGHEKAVSYVKF-L-DSET-LVSASTDNTLKLWD WD 7 965-1003 -NPCSLTLSGHTNEKNFVGLSV-FDGY-IACGSETNEVYAYH WD 8 1021-1059 -ISGKETEDDNGQFVSSVCWRG-KSDM-VVAANSSGCIKVLQ WD40 Template TGECLRTLSGHTSGVTSVSFSP-DGKR-LVSGSEDGTIKVWD |
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