Input parameters:

  Query = CmaCh17G011470 (Len=488)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh17G011470, Len=488):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYGIPSWDTIGDMGYALSRLEIGSDCDGDMSINAAVEGQVSNKPLNYLDDEIAQLTRMKSGPSSHLSQVLPGKREVYISP 80  
WD40-rpts                    (___________________WD 1__________________)          (____________

Query       81 VKMLAGRECNYSGKGRFSAGDCCHILSRYLPVNGPWLVDQMTSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDNGWKVQKN 160 
WD40-rpts      _______WD 2___________________)(_________________WD 3________________)(_________

Query      161 ILAKSLRWTITDTSLSPDQHFLVYASMSPIIHIVNVSSAETESLANITEVHEGLDFCAHGDGRDSFGIFSVKFSTDGREL 240 
WD40-rpts      ___________WD 4___________________)                      (_______________WD 5___

Query      241 VAGSSDDSIYVYDLETNKLSLRILAHRSDVNTVCFADESGHLVYSGSDDTFCKVWDRRCFISKGKAAGILEGHVEGITFI 320 
WD40-rpts      ____________)   (_________________WD 6_________________)       (________________

Query      321 DSRGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDWDYRWMDYPLHAKNLMHPRDRSVATYKGHSVLRTLIRCYF 400 
WD40-rpts      _WD 7________________)                                             (____________

Query      401 SPESSTGQKYIYTGSHNSCVYIYDLLTGDLVATLKHHKSPVRDCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKK 480 
WD40-rpts      ____WD 8_______________)   (_________________WD 9________________)              

Query      481 RVRRRHFY 488 
WD40-rpts              

9 WD40-repeats found in QUERY=CmaCh17G011470 (Len=488):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-57       5.42  338.55  0.00170       10.0%     38.50
  WD 2:  Seg  6    68-111      5.73  351.21  0.00115        5.0%     41.71
  WD 3:  Seg 10   112-150      8.17  451.95  5.0e-05       22.5%     51.44
  WD 4:  Seg 14   151-195      7.47  423.16  0.00012       22.5%     52.67
  WD 5:  Seg 19   218-253      8.77  476.80  2.3e-05       37.5%     42.81
  WD 6:  Seg 22   257-296      8.47  464.34  3.4e-05       35.0%     55.46
  WD 7:  Seg 26   304-342     10.03  528.81  4.6e-06       40.0%     56.85
  WD 8:  Seg 32   388-424      5.36  335.94  0.00185       25.0%     23.02
  WD 9:  Seg 35   428-466      9.67  514.17  7.3e-06       37.5%     57.69

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-57     YA----LSRL-----EIGSDCDGDMSINAAVE-GQVSNKPLNYLDDEIAQLTR
   WD 2   68-111    QVLPGKREVY-----ISPVKMLAGRECNYSGK-GRFS---AGDCCHILSRYLP
   WD 3  112-150    -V----NGPW-----LVDQMTSRAYVSQFSSD-GSLF---VAGFQGSHIRIYN
   WD 4  151-195    VD----NGWKVQKNILAKSLRWTITDTSLSPD-QHFL---VYASMSPIIHIVN
   WD 5  218-253    --------AH-----GDGRDSFGIFSVKFSTD-GREL---VAGSSDDSIYVYD
   WD 6  257-296    -N----KLSL-----RILAHRSDVNTVCFADESGHLV---YSGSDDTFCKVWD
   WD 7  304-342    -G----KAAG-----ILEGHVEGITFIDSRGD-GRYL---ISNGKDQTIKLWD
   WD 8  388-424    GH----SVLR-----TL---IRCYFSPESSTG-QKYI---YTGSHNSCVYIYD
   WD 9  428-466    -G----DLVA-----TLKHHKSPVRDCSWHPQ-YPML---VSSSWDGDVVKWE

   WD40 Template    TG----ECLR-----TLSGHTSGVTSVSFSPD-GKRL---VSGSEDGTIKVWD