WDRR: WD40 Repeat Recognition
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| JobID: 2KRFZ1659499862 Submitted: 2022-08-03 12:11:02 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79750848 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G010850 (Len=1217) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G010850, Len=1217): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________)
Query 81 KTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRLWNWQSRTCISVLTGHNHYVMCASFHPKDDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDIGALRKKTVSPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
WD40-rpts __) (_______________________WD 5_______________________)(_______
Query 241 VDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWDVTKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLER 320
WD40-rpts ____________WD 6___________________) (________________WD 7________________)
Query 321 ERPAFAISGDSLFYTKDRFLRFYEFSTQRDTQVIPIRRPGSICLNQSPRSISYSPTENAVLICSDLENGSYELYTIPKES 400
WD40-rpts
Query 401 IGRGDSVQDAKKGVGGSAVFVARNRFAVLDKSNNQVLVKNIKNEVVKKSVLPIAADAIFYAGTGNLLCRAEDRVVLFDLQ 480
WD40-rpts (_
Query 481 QRIVLGDLQTPFMKYVIWSNDMETVALLSKHVIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS 560
WD40-rpts ________________WD 8_________________)
Query 561 GIIRTLDVPIYITKVSGNTIFCLDRDGKCRTFVIDATEYIFKLSLLKKKFDHVMSMIKNSQLCGQAMISYLQQKGFPEVA 640
WD40-rpts
Query 641 LHFVKDERTRFNLALESGSIQIAVASATALDEKDHWYKLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNIDKLSK 720
WD40-rpts
Query 721 MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYITASVHGLHDVAERLAAELGDDVPVFPKGKVPSLLMPPS 800
WD40-rpts
Query 801 PVMCGGDWPLLRVMKGIFEGGLDTVGRGVADEEDEAADGDWGVELEMVEVDGLRNGDTTVILEDGEVAEENEEDGGWDLE 880
WD40-rpts
Query 881 DLELPPEAETPKTSISTRSFFVSPTPGMPVNQIWIQRSSLAAEHAAAGNFDTAMRLLSRQLGIKNFAPLKSMFLDLHAGS 960
WD40-rpts
Query 961 HSHLRAFSSAPVITLAVERGWSESASPNVRGPPALILNFSQLEEKLKAGYKATTSGRFTEALKLFLSIIHTIPLVVVESK 1040
WD40-rpts
Query 1041 REVDEVKELIIIVKEYVLGLQMELKRREMKDNPTRQQELAAYFTHCNLQLPHLRLALQNAMTVCFKAKNLATAGNFARRL 1120
WD40-rpts
Query 1121 LETNPVVENQAKAARQVLQAAERNMTDATKLNYDFRNPFVICGATYMPIYRGQKNVSCPYCSTHFVLSQEGQFCTVCDLA 1200
WD40-rpts
Query 1201 AVGAEASGLVCSPSQVR 1217
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh11G010850 (Len=1217): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 4.54 302.34 0.00523 20.0% 49.33 WD 2: Seg 4 41-79 7.34 417.91 0.00015 32.5% 56.18 WD 3: Seg 8 83-121 8.42 462.49 3.6e-05 37.5% 57.20 WD 4: Seg 12 125-163 8.86 480.75 2.1e-05 40.0% 55.12 WD 5: Seg 17 181-232 7.55 426.38 0.00011 35.0% 55.99 WD 6: Seg 21 233-276 8.47 464.44 3.4e-05 40.0% 55.50 WD 7: Seg 25 280-317 3.10 242.74 0.03284 15.0% 55.60 WD 8: Seg 43 479-518 2.98 237.71 0.03828 15.0% 41.86Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 T---------------------KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWD WD 2 41-79 -GT------------L----IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 83-121 -HR------------C----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRLWN WD 4 125-163 -RT------------C----ISVLTGHNHYVMCASFHPKDDLVVSASLDQTVRVWD WD 5 181-232 LSQMNTDLFGGVDAVV----KYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWR WD 6 233-276 MND------------TKAWEVDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWD WD 7 280-317 -RT------------G----IQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 479-518 LQQ------------R----IVLGDLQTPFMKYVIWSNDMETVALLSKHVIIIASK WD40 Template TGE------------C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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