Input parameters:

  Query = CmaCh07G008860 (Len=1203)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh07G008860, Len=1203):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKSYLRYEPAAAFGVIVSVDSNITYDSSGKHLIAPALEKIGVWNVRQGVCTKNLTPTQCSRGPSLAVTSVASALSSLIA 80  
WD40-rpts             (________________WD 1________________)         (________________WD 2_____

Query       81 SGYGNGSIRIWDTEKGTCETTLHGHKGAVTVLRYNKLGSMLASGSKDNDVILWDAVGETGLFRLRGHRDQVTDLVFLDSS 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 KKLVSSSKDKFLRVWNLDTQHCMQIVGGHHSEIWSMDIDPDERFLVTGSADQELRFFTTKHDWVDGKSVDESNTNGTEKD 240 
WD40-rpts      _______________)   (_________________WD 5________________)                      

Query      241 KDQFTKSKWEVLKQFGEIMRQSKDRVATVRFNKSGNLLACQVAGKTVELFHVLDENEAKRKAKRRINRKKGKKAGKGEHD 320 
WD40-rpts                 (_________________WD 6_________________)                             

Query      321 VIENGDTNHAIGEEGSGTTITVSDVFKLLHTIRASKKICSLSFCPSISKNSLSILTLSLNNNLLEVYSVESSAVTKLHSI 400 
WD40-rpts                              (___________________WD 7___________________)          (_

Query      401 ELQGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCGLIIPQNKYALVGNKSGGIEILDIASGSCI 480 
WD40-rpts      ______________WD 8______________)(_________________WD 9_________________)   (___

Query      481 EVVEAHGGSIRSIVALPNENEFVTASADHDIKFWEYQIEKKSDQNPRTLTITFVRSMKMNDDVLSAAVSPDAKYLAAALL 560 
WD40-rpts      ______________WD10________________)                    (______________WD11______

Query      561 DSTVKVFFMDTFKVFRTLYGHKLPVLCMDISSDGDLLVTGSADKNLKIWGLDFGDCHKSIFAHSDSVMAVQFVKKTHYVF 640 
WD40-rpts      _______)   (_________________WD12________________)   (_________________WD13_____

Query      641 SVGKDRLVKYWDADKFELLLTLEGHHADVWCLAISNRGDFIVTGSHDRSIRCWDRTEEPFFIEEEKEKRLEAMFESDLDN 720 
WD40-rpts      ___________)   (_________________WD14________________)(_________________WD15____

Query      721 AFENRYMPNEEVPEEGAVALAGKKTQETISATDLIIDALDMAEAEIKRISEYEEEKINGRASRFEPNVLMLGLSPSEYVL 800 
WD40-rpts      _____________)                             (__________________WD16______________

Query      801 RALSNVHTNDLEQTLLALPFSDSLKLLSYLKDWTSKPDKVELICRISTVLLQTHHNQLVTTPAARPALTILKDILYARIK 880 
WD40-rpts      ___)                                                                            

Query      881 ECKDTIGFNLAAMDHLKQLLSMRSDALFLDAKLKLQEIRSQNSKRLETRTDMRQGKRKKKNNCELREVQNGHTHTQNRHK 960 
WD40-rpts                                                                                      

Query      961 VDIEESQDGFNGINNYVAEVYTVEFAVQNNCKFPIWPGALTGAGSQLSTTGFEILPGSTLTVTTSPPWSGRFWARTHCST 1040
WD40-rpts                                                                                      

Query     1041 DATGKFSCGTGDCGSGQVTCDGAGAIPPASLLEFTIAPNGGRDFFDISLVDGFNLPVSVTPIGGSSECKSVICAGNVNGV 1120
WD40-rpts                                                                                      

Query     1121 CPPELAVKGQGGGVIACKSACLGLNRPEYCCSGGYDQPQTCPPTNYSKIFKNECPDAYSYAYDDKTSTFTCTGGANYGIT 1200
WD40-rpts                                                                                      

Query     1201 FCP 1203
WD40-rpts         

16 WD40-repeats found in QUERY=CmaCh07G008860 (Len=1203):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-45       4.75  310.93  0.00401       20.0%     49.78
  WD 2:  Seg  6    55-92       6.11  367.23  0.00070       30.0%     40.89
  WD 3:  Seg  9    96-134      9.74  516.97  6.7e-06       40.0%     59.37
  WD 4:  Seg 13   138-176      8.95  484.42  1.8e-05       37.5%     59.12
  WD 5:  Seg 17   180-218      8.56  468.42  3.0e-05       30.0%     57.65
  WD 6:  Seg 22   252-291      8.23  454.59  4.6e-05       15.0%     48.86
  WD 7:  Seg 29   345-388      4.06  282.32  0.00972       12.5%     46.84
  WD 8:  Seg 34   399-433      6.59  386.97  0.00038       35.0%     44.84
  WD 9:  Seg 37   434-473      6.11  367.24  0.00070       15.0%     52.06
  WD10:  Seg 41   477-515      9.10  490.43  1.5e-05       27.5%     57.41
  WD11:  Seg 46   536-568      6.50  383.28  0.00043       27.5%     48.06
  WD12:  Seg 49   572-610      9.40  502.86  1.0e-05       40.0%     57.16
  WD13:  Seg 53   614-652      8.70  474.17  2.5e-05       27.5%     56.43
  WD14:  Seg 57   656-694      9.28  497.98  1.2e-05       40.0%     56.39
  WD15:  Seg 61   695-734      2.88  233.45  0.04358       10.0%     27.03
  WD16:  Seg 67   764-804      3.68  266.64  0.01577       12.5%     41.11

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-45     -YE---PAAAFGVIVSVDS--NITYDSSGKHLI-APALE-KIGVWN
   WD 2   55-92     -LT---PTQCSRGPSLAVT--SV-ASALSSLIA-SGYGNGSIRIWD
   WD 3   96-134    -GT---CETTLHGHKGAVT--VLRYNKLGSMLA-SGSKDNDVILWD
   WD 4  138-176    -ET---GLFRLRGHRDQVT--DLVFLDSSKKLV-SSSKDKFLRVWN
   WD 5  180-218    -QH---CMQIVGGHHSEIW--SMDIDPDERFLV-TGSADQELRFFT
   WD 6  252-291    LKQ---FGEIMRQSKDRVA--TVRFNKSGNLLA-CQVAGKTVELFH
   WD 7  345-388    VFKLLHTIRASKKICSLSF--CPSISKNSLSILTLSLNNNLLEVYS
   WD 8  399-433    -------SIELQGHRSDVR--SVTLSSDNSLLM-STSHN-AVKIWN
   WD 9  434-473    PST---GSCLRTIDSGYGL--CGLIIPQNKYAL-VGNKSGGIEILD
   WD10  477-515    -GS---CIEVVEAHGGSIR--SIVALPNENEFV-TASADHDIKFWE
   WD11  536-568    ----------SMKMNDDVL--SAAVSPDAKYLA-AALLDSTVKVFF
   WD12  572-610    -FK---VFRTLYGHKLPVL--CMDISSDGDLLV-TGSADKNLKIWG
   WD13  614-652    -GD---CHKSIFAHSDSVM--AVQFVKKTHYVF-SVGKDRLVKYWD
   WD14  656-694    -FE---LLLTLEGHHADVW--CLAISNRGDFIV-TGSHDRSIRCWD
   WD15  695-734    RTE---EPFFIEEEKEKRL--EAMFESDLDNAF-ENRYMPNEEVPE
   WD16  764-804    -AE---IKRISEYEEEKINGRASRFEPNVLMLG-LSPSEYVLRALS

   WD40 Template    TGE---CLRTLSGHTSGVT--SVSFSPDGKRLV-SGSEDGTIKVWD