Input parameters:

  Query = S.pombe (Len=369)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (S.pombe, Len=369):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQTNNPSYFFRSESALQDEKRKEEKSHNPNGNPRNLKAKILNIELDRTTPKKKQFPRLFVCEASHICKLYDLEINKTCKT 80  
WD40-rpts                                   (__________________WD 1__________________)   (_____

Query       81 YKGHSGPVTCCQIESLRKDGKVRHIYTGSWDHTIKKWNVSTGECVETLIGHTDYVKCLLLLEEEGLLLSGSTDASLIVWD 160 
WD40-rpts      ______________WD 2___________________)   (_________________WD 3________________)

Query      161 VSSQPSRLLYKLTGHSRGIECITRQPNTDIFWTCGSESSIRCWHITKVGGSQLEEEGFWGHQSNVYCLLFDPQDSEALWT 240 
WD40-rpts           (_________________WD 4________________)       (_________________WD 5_______

Query      241 ASADKTVREWSLYQGIHEETRMEHPDVCTDVLTLADGNIATACRDEEIRVWDTTTGNVKDIYSGHYESVTKILQWKSYLI 320 
WD40-rpts      __________)   (________________WD 6________________)   (________________WD 7____

Query      321 SSSLDQTIRVWDLEYSADNNEADDHPSLGPPSTKLTAEELAELEELMND 369 
WD40-rpts      ___________)                                     

7 WD40-repeats found in QUERY=S.pombe (Len=369):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    30-71       6.29  374.37  0.00056       20.0%     44.34
  WD 2:  Seg  4    75-118      7.78  436.08  8.3e-05       30.0%     55.98
  WD 3:  Seg  8   122-160     10.36  542.57  3.0e-06       42.5%     56.32
  WD 4:  Seg 12   166-204      9.10  490.49  1.5e-05       20.0%     56.14
  WD 5:  Seg 16   212-251      7.67  431.34  9.6e-05       30.0%     51.77
  WD 6:  Seg 20   255-292      7.89  440.56  7.2e-05       30.0%     53.94
  WD 7:  Seg 24   296-332      7.65  430.69  9.8e-05       37.5%     53.38

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-71     NGNPRNLKAKILNIELDRTTP-----KKKQFPRLFVCEASHICKLYD
   WD 2   75-118    NKTCKTYKGHSGPVTCCQIESLRKDGKVR---HIYTGSWDHTIKKWN
   WD 3  122-160    GECVETLIGHTDYVKCLLLLE-----EEG---LLLSGSTDASLIVWD
   WD 4  166-204    SRLLYKLTGHSRGIECITRQP-----NTD---IFWTCGSESSIRCWH
   WD 5  212-251    QLEEEGFWGHQSNVYCLLFDP----QDSE---ALWTASADKTVREWS
   WD 6  255-292    GIHEETRMEHPDVCTDVLTLA-----DGN----IATACRDEEIRVWD
   WD 7  296-332    GNVKDIYSGHYESVTKILQ-------WKS---YLISSSLDQTIRVWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-----DGK---RLVSGSEDGTIKVWD