WDRR: WD40 Repeat Recognition
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| JobID: 2FRG71659498377 Submitted: 2022-08-03 11:46:17 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79752713 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G006220 (Len=943) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G006220, Len=943): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEESGNNGLESGEMHNTHPKDFVCPITCNIFYDPVTIETGQTYERSAIQEWLDRGNSTCPITGQKLQNTQLPKTNYVLKR 80
WD40-rpts
Query 81 LIASWLEENPNFVTDKADSAAVLTSPVSVISQASINRSMEVRHAISNIVSSEVLEEAESAVLCVERFWLEENVDVEIQHM 160
WD40-rpts
Query 161 LLKPPVINGLVEILINSVDLQALRATIFLLSELGFKDAAVIQMLTRVESDVDCIVTLFKSGLMEAVVLIYRFGLSIQCLQ 240
WD40-rpts
Query 241 EMDLAGSLLNVVKKKEDVNKMQLSPKSAAVILLRKILGRSKEGSMIAVAVLAENAIESILVSLKAKQVEERIAAVGILLR 320
WD40-rpts
Query 321 CIQEDGKCRNMIADKADLAPILGSFMEVSNGEQFEIIMFLSELVKLNRRTFNEQILQNIKDGGECSTMHSLLVYLQTAPK 400
WD40-rpts
Query 401 DQCPVVAGFLLQLDILVEPRKSSIYREEAMDVLLSCLGNSDFPTAQISAAETIMSLQGRFSTSGRPLARYVLLERVGFAK 480
WD40-rpts
Query 481 GCMKPKRRDNNSSGPGDVELSIKAEERSNDEWERKMAFVLASHNFGLLFEPLAKGLKSKYAALFSACFVSATWLSHMLKV 560
WD40-rpts
Query 561 LPDTGILDAARVCLLDHFVSIFVTTTDIEEKALALLGMNSFVHQPEGLQYLSSNTKDIMRGLKELRRSTALAFEMLKVLC 640
WD40-rpts (_____________________WD 1___________
Query 641 EGEESSAELWSHQELFLVDCSKNGEVLSIAYLKEQIISGHSDGTIKVWSVGGTNLHLLQETQEHSKGVTSLAIIESEEKL 720
WD40-rpts __________)(________________WD 2________________)(___________________WD 3_______
Query 721 YSGSLDKTIKVWSLGSDVIQCIKVHDVKDQVHNLVVSKTIACFIPHGAGIRGYSWGGESKLLNSNKHVKCLNLVRGKLYC 800
WD40-rpts ____________)(___________________WD 4__________________)(_______________WD 5____
Query 801 GCHDSSIQEVDLATGTVSYIHIGSRKLLGKPNIVQSLQIYEEQLFSASTTLDGAAVKIWSMSNNSVIASLSTAMDIRTMA 880
WD40-rpts __________) (_________________WD 6_________________) (_______________W
Query 881 VSSDLTYLGGRGGVVEIWGRDKLNKIDTLQTGRICKVACMTLNEREDVLVIGTSDGRIQGWGL 943
WD40-rpts D 7_______________)(___________________WD 8__________________)
 8 WD40-repeats found in QUERY=CmaCh11G006220 (Len=943): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 10 604-651 7.00 403.61 0.00023 20.0% 43.61 WD 2: Seg 14 652-689 8.17 452.01 5.0e-05 30.0% 48.60 WD 3: Seg 18 690-733 9.70 515.43 7.0e-06 42.5% 56.87 WD 4: Seg 22 734-776 4.17 286.90 0.00844 10.0% 28.47 WD 5: Seg 26 777-811 4.16 286.48 0.00855 17.5% 45.02 WD 6: Seg 31 821-860 6.63 388.51 0.00036 25.0% 44.67 WD 7: Seg 34 864-899 4.73 309.98 0.00413 17.5% 48.81 WD 8: Seg 38 900-942 7.07 406.68 0.00021 22.5% 48.71Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 604-651 QP----EGL---QY---LSSNTKDIMRGLKELRRSTALAFEMLKVLCEGEES-SAELWS WD 2 652-689 HQ----ELF---LV---DCSKNGE--------VLSIAYLKE--QIISGHSDG-TIKVWS WD 3 690-733 VGGTNLHLL---QE---TQEHSKG--------VTSLAIIESEEKLYSGSLDK-TIKVWS WD 4 734-776 LG----SDVIQCIK---VHDVKDQ--------VHNLVVSKTIACFIPHGAGI-RGYSWG WD 5 777-811 -------GE---SK---LLNSNKH--------VKCLNL--VRGKLYCGCHDS-SIQEVD WD 6 821-860 -H----IGS---RK---LLGKPNI--------VQSLQIYEEQLFSASTTLDGAAVKIWS WD 7 864-899 -N----SVI---AS---LSTAMD---------IRTMAVSSDL--TYLGGRGG-VVEIWG WD 8 900-942 RD----KLN---KIDTLQTGRICK--------VACMTLNEREDVLVIGTSDG-RIQGWG WD40 Template TG----ECL---RT---LSGHTSG--------VTSVSFSPDGKRLVSGSEDG-TIKVWD |
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