Input parameters:

  Query = gi_25455692_gb_AAH40173.1_WDR85 (Len=227)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_25455692_gb_AAH40173.1_WDR85, Len=227):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGQVSGRRSVPPRGLVEQVSLAFLICLLWLVGFSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHNLLLAACMHS 80  
WD40-rpts      (___________________WD 1__________________)                                     

Query       81 GFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWSWLLFRSLQRAPSWSFPSNLGTKTADLKGASELPTPCHECREDND 160 
WD40-rpts                                                                                      

Query      161 GEGHARPQSGMKPLTEGMRKNGTWLQATAATTRDCGVNPEEADSAFSLLATCSFYDHALHLWEWEGN 227 
WD40-rpts                                                                         

1 WD40-repeats found in QUERY=gi_25455692_gb_AAH40173.1_WDR85 (Len=227):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-43       3.75  269.73  0.01434       30.0%     10.62

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-43     MGQVSGRRSVPPRGLVEQVSLAFLICLLWLVGFSYDEHILLWD

   WD40 Template    TGECLRTLSGHTSGV---TSVSFSPDGKRLVSGSEDGTIKVWD