WDRR: WD40 Repeat Recognition
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| JobID: 2AX3P1659504474 Submitted: 2022-08-03 13:27:54 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747653 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh17G007770 (Len=272) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh17G007770, Len=272): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPVQKIESGHQDTVHNVTMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASCSYGGR 80
WD40-rpts (_________________WD 1________________) (__________________WD 2_____________
Query 81 VIIWKEGNQNEWSQAHVFDDLFTARQDGGWDTSSIDQVHPLGVTSVSWAPSSAPGALVGSGLVDSVHKLCSGGCDNTVKV 160
WD40-rpts ____)(_________________WD 3________________)(________________WD 4_______________
Query 161 WKPYNGIWKMDCFPALQMHTDWVRDIAWAPNLGLPKSTIASASQDGQVIIWTVAREGDQWEGKILNDFKTPVWRVSWSMT 240
WD40-rpts _) (___________________WD 5__________________)(____________________WD 6___
Query 241 GNILAVADGNNNVTLWKEDVDGDWQQVTTVEP 272
WD40-rpts ________________)
 6 WD40-repeats found in QUERY=CmaCh17G007770 (Len=272): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-39 9.39 502.37 1.1e-05 35.0% 47.71 WD 2: Seg 4 45-85 8.00 445.18 6.2e-05 30.0% 55.62 WD 3: Seg 8 86-124 4.68 307.95 0.00440 12.5% 23.18 WD 4: Seg 12 125-162 8.06 447.66 5.8e-05 22.5% 46.61 WD 5: Seg 16 170-212 7.99 444.62 6.3e-05 27.5% 51.72 WD 6: Seg 20 213-257 8.10 449.46 5.4e-05 20.0% 52.12Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-39 -MP-----VQKIESGHQDTVHNVTMDYY----GKRLATASSDQTIKIIG WD 2 45-85 -SQ-----HLATLTGHQGPVWQAAWAHP--KFGSLLASCSYGGRVIIWK WD 3 86-124 EGN-----QNEWSQAHVFDDLFTARQDG----GWDTSSIDQVHPLGVT- WD 4 125-162 --S-----VSWAPSSAPGALVGSGLVDS----VHKLCSGGCDNTVKVWK WD 5 170-212 -MD-----CFPALQMHTDWVRDIAWAPNLGLPKSTIASASQDGQVIIWT WD 6 213-257 VAREGDQWEGKILNDFKTPVWRVSWSMT----GNILAVADGNNNVTLWK WD40 Template TGE-----CLRTLSGHTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD |
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