Input parameters:

  Query = CmaCh03G010680 (Len=353)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh03G010680, Len=353):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELPTKEANVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLCSCGG 80  
WD40-rpts             (_________________WD 1________________)   (_________________WD 2_________

Query       81 DRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNESASVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEII 160 
WD40-rpts      _______)   (_________________WD 3________________)     (________________WD 4____

Query      161 GGSVDGTVRTFDMRIGREISDNLGQPVNCISMSNDANCVLASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240 
WD40-rpts      ___________)(_________________WD 5_________________)   (__________________WD 6__

Query      241 AHVTGGSEDGYIYFWDLVDASVVSKFRAHSSVVTSVSYHPKDECMITASVDGTIRVLQNANRNRNVISGCFLTDHPNPLY 320 
WD40-rpts      _______________)   (_________________WD 7________________)(_________________WD 8

Query      321 ASNLLLDGYQLKLINLFVVHSNSELRRRNHIVL 353 
WD40-rpts      _________________)               

8 WD40-repeats found in QUERY=CmaCh03G010680 (Len=353):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     8-46       9.62  511.99  7.8e-06       32.5%     53.22
  WD 2:  Seg  6    50-88       9.60  511.34  8.0e-06       30.0%     58.64
  WD 3:  Seg 10    92-130      9.93  524.81  5.3e-06       30.0%     58.33
  WD 4:  Seg 14   136-172      7.47  423.04  0.00012       25.0%     50.43
  WD 5:  Seg 18   173-212      7.71  432.95  9.1e-05       17.5%     55.09
  WD 6:  Seg 22   216-256      8.44  463.48  3.5e-05       35.0%     55.24
  WD 7:  Seg 26   260-298      9.79  518.99  6.3e-06       35.0%     58.95
  WD 8:  Seg 30   299-338      3.89  275.42  0.01203       12.5%     29.61

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-46     -TK------EANVLKGHEGGV--LAARFNSDGNYCLSCGKDRTIRLWN
   WD 2   50-88     -GI------HIKTYKSHGREV--RDVHVTPDNSKLCSCGGDRQVFYWD
   WD 3   92-130    -GR------VIRKFRGHDGEV--NAVKFNESASVVVSAGYDQSLRAWD
   WD 4  136-172    -TE------PIQIIDTFSDSV--MSVCLTKSE--IIGGSVDGTVRTFD
   WD 5  173-212    MRI------GREISDNLGQPV--NCISMSNDANCVLASCLDSTLRLLD
   WD 6  216-256    -GE------LLQEYKGHTCKSYKLDCCLTNTDAHVTGGSEDGYIYFWD
   WD 7  260-298    -AS------VVSKFRAHSSVV--TSVSYHPKDECMITASVDGTIRVLQ
   WD 8  299-338    NANRNRNVISGCFLTDHPNPL--YASNLLLD------GYQLKLINLFV

   WD40 Template    TGE------CLRTLSGHTSGV--TSVSFSPDGKRLVSGSEDGTIKVWD