WDRR: WD40 Repeat Recognition
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| JobID: 2744M1659503291 Submitted: 2022-08-03 13:08:11 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748006 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G008310 (Len=412) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G008310, Len=412): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDPLVAEAATPLLHSTSSDTSSDADENTPVTSYSFDLKQIGFRCDFLSKSPSGYCPYRQLAVLSGHIGSVSCLALCGEFI 80
WD40-rpts (_________________WD 1_________________) (________________WD 2___
Query 81 LSASQGKDIIVWQQPDLRVFTRFGHGEGSVKAVVAVGSKVFTAHQDGKIRVWKVSRRSENNFRLVNTLPTAKDYLGKFMK 160
WD40-rpts ____________) (________________WD 3_______________)
Query 161 QRNYVQTRRHHKILWIEHADTISCLAVHNGLIYSGSWDKTLKIWRVSDLKCLESIKAHDDAINGIVICNGIVYSASADGK 240
WD40-rpts (_______________WD 4______________) (________________WD 5___________
Query 241 IKAWGRKKQEQEETHCLLGILEGHKDESMNCVVVSGDGKWVYGGISDGFLMGWEKTGESVSCWKVVWERRAHKMAVLCVC 320
WD40-rpts ____) (_________________WD 6_________________) (________________W
Query 321 LMGEFLCSGSADKSIGIWRREAFGRLCKVGVINGHDGPIKCLQVAPNGVGEGFLLYSGSLDRSLRVWWVSKASAMGVGAL 400
WD40-rpts D 7_______________)(______________________WD 8_____________________)
Query 401 VAEDSKKAIVSF 412
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh15G008310 (Len=412): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 14-53 6.17 369.36 0.00065 15.0% 15.63 WD 2: Seg 3 57-93 6.55 385.13 0.00040 27.5% 55.49 WD 3: Seg 7 97-133 6.95 401.72 0.00024 20.0% 50.88 WD 4: Seg 13 171-205 6.26 373.45 0.00058 20.0% 46.48 WD 5: Seg 17 209-245 7.67 431.50 9.5e-05 25.0% 54.05 WD 6: Seg 21 255-294 7.67 431.42 9.5e-05 32.5% 53.07 WD 7: Seg 25 303-339 6.55 385.22 0.00040 25.0% 48.43 WD 8: Seg 29 340-388 7.57 427.46 0.00011 27.5% 53.94Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 14-53 HST-----SSDTSSDADE-NTPVTSYSFDLK----QIGFRCDFLSKSPSG WD 2 57-93 -YR-----QLAVLSGHIG-SVSCLALCGE------FILSASQGKDIIVWQ WD 3 97-133 -LR-----VFTRFGHGEG-SVKAV--VAVGS----KVFTAHQDGKIRVWK WD 4 171-205 --------HKILWIEHAD-TISC--LAVHNG----LIYSGSWDKTLKIWR WD 5 209-245 -LK-----CLESIKAHDD-AINGIVICNG------IVYSASADGKIKAWG WD 6 255-294 -HC-----LLGILEGHKDESMNCVVVSGDGK----WVYGGISDGFLMGWE WD 7 303-339 -WK-----VVWERRAHKM-AV--LCVCLMGE----FLCSGSADKSIGIWR WD 8 340-388 REAFGRLCKVGVINGHDG-PIKCLQVAPNGVGEGFLLYSGSLDRSLRVWW WD40 Template TGE-----CLRTLSGHTS-GVTSVSFSPDGK----RLVSGSEDGTIKVWD |
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