Input parameters:

  Query = CsaV3_1G001440 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G001440, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVAHCTLDGNADGVEFCPHSSFSNVLAASTYTLQEGEQPSRSGSLSIFNINADIGSLELLHRVETAGIFDIKWSSVGQT 80  
WD40-rpts      (_________________WD 1_________________)               (___________________WD 2_

Query       81 ASPLLAQADADGCLRIHALECSSNGVEGEYCLKEKCGSKISSSMCLCLDWNTSASSISVGHSDGSISILSAGESHLEVQN 160 
WD40-rpts      _________________)                  (______________WD 3______________)(_________

Query      161 QWKAHEFELWATSFDTHQPHLVYTGSDDCKFSCWDLRDTPSKVFHNTKVHKMGVCCIAKIPNDPYKLLTGSYDENLRVWD 240 
WD40-rpts      ___________WD 4___________________)     (_________________WD 5_________________)

Query      241 IRAISKPINETSICLGGGVWKIKPHPSVSDVVLAACMHNGFAIVRVKDDGAEVVETYAKHNSLAYGADWQRGDSSQEDKR 320 
WD40-rpts           (__________________WD 6_________________)    (______________________WD 7___

Query      321 KRYAVATCSFYDKLLRIWIPETDIIT 346 
WD40-rpts      __________________)       

7 WD40-repeats found in QUERY=CsaV3_1G001440 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       6.60  387.37  0.00037       17.5%     26.85
  WD 2:  Seg  5    56-98       5.58  345.26  0.00138       17.5%     48.32
  WD 3:  Seg 10   117-150      6.81  395.83  0.00029       12.5%     46.87
  WD 4:  Seg 13   151-195      7.02  404.49  0.00022       25.0%     54.37
  WD 5:  Seg 17   201-240      7.83  438.29  7.7e-05       30.0%     55.22
  WD 6:  Seg 21   246-286      3.50  259.18  0.01985       17.5%     51.65
  WD 7:  Seg 25   291-339      5.13  326.72  0.00246       17.5%     50.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MD----VAHCTLDGNADGVEFCPHSS---------FSN--V-LAAST-YTLQEGEQP
   WD 2   56-98     -G----SLELLHRVETAGIFDIKWSS-----VGQTASP--L-LAQAD-ADGCLRIHA
   WD 3  117-150    ----------GSKISSSMCLCLDWNT---------SAS--S-ISVGH-SDGSISILS
   WD 4  151-195    AGESHLEVQNQWKAHEFELWATSFDT---------HQP--HLVYTGS-DDCKFSCWD
   WD 5  201-240    -S----KVFHNTKVHKMGVCCIAKIP--------NDPY--K-LLTGS-YDENLRVWD
   WD 6  246-286    -K----PINETSICLGGGVWKIKPHP---------SVSDVV-LAACM-HNGFAIVRV
   WD 7  291-339    -A----EVVETYAKHNSLAYGADWQRGDSSQEDKRKRY--A-VATCSFYDKLLRIWI

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSP---------DGK--R-LVSGS-EDGTIKVWD